Hi Henrik, For GWS6 data it seems to me that they can be processed to generate either an "AromaUnitTotalCnBinarySet" or a "CnChipEffectSet". For example, codes in your vignette "Estimation of total copy numbers using the CRMA v2 method" will produce a "CnChipEffectSet", whereas when one uses the "doCRMAv2" wrapper function it will produce an "AromaUnitTotalCnBinarySet".
My question is whether these two data types are interchangeable? They don't seem able to be combined in downstream analysis such as CbsModel. The thing is that we processed the HAPMAP reference samples using "doCRMAv2" which produced an "AromaUnitTotalCnBinarySet"; and recently we processed another dataset following the example in "http:// www.aroma-project.org/node/117" which produced a "CnChipEffectSet". However when we loaded both of them and tried to create a CbsModel using the pooled HAPMAP as reference, it failed. Is there a way to convert the one object into the other? Or do we have to reprocess one dataset to generate the same type of object as the other? Thanks very much for your help. Best, Kai -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
