I am trying to install aroma.affymetrix on a linux cluster. I run source("http://aroma-project.org/hbLite.R") and hbInstall("aroma.affymetrix")
The program attempts to install/upgrade R.methodsS3 but this doesn't seem to work. A lot of output is produced as R tries to install all of the various dependencies so it is hard to tell what is going wrong but there seems to be a problem with lazy loading. I frequently see the message Error in R.methodsS3:::export(...tmpfcn) <- TRUE : invalid function in complex assignment Error : unable to load R code in package R.methodsS3 Error : lazy loading failed for package R.methodsS3 In the end a large number of warnings are produced which say that installation of the R.methodsS3, R.oo, R.utils, R.cache, R.filesets, R.devices, R.rsp, matrixStats,aroma.core, aroma.light have non-zero exit status. I assume this means these packages are not installed. Any thoughts on how to fix these problems? Thanks, Mike -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/