I am trying to install in R.12.1. Is this causing the problem?
On Thursday, September 6, 2012 12:52:59 PM UTC-4, Mike wrote:
>
> I am trying to install aroma.affymetrix on a linux cluster.
>
> I run source("http://aroma-project.org/hbLite.R";) and
> hbInstall("aroma.affymetrix")
>
> The program attempts to install/upgrade R.methodsS3 but this doesn't seem
> to work. A lot of output is produced as R tries to install all of the
> various dependencies so it is hard to tell what is going wrong but there
> seems to be a problem with lazy loading.
> I frequently see the message
> Error in R.methodsS3:::export(...tmpfcn) <- TRUE : invalid function in
> complex assignment
> Error : unable to load R code in package R.methodsS3
> Error : lazy loading failed for package R.methodsS3
>
> In the end a large number of warnings are produced which say that
> installation of the R.methodsS3, R.oo, R.utils, R.cache, R.filesets,
> R.devices, R.rsp, matrixStats,aroma.core, aroma.light have non-zero exit
> status. I assume this means these packages are not installed.
>
> Any thoughts on how to fix these problems?
>
> Thanks,
> Mike
>
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