Hi Stefano I think you can probably just copy 'etc/run_blastp' from version 7 to version 8 then.
Regards Tim On 30/1/07 16:16, "Stefano Ghignone" <[EMAIL PROTECTED]> wrote: > Dear all, > ....ok...I need an help! > > I have an artemis v.7 working on a FedoraCore3 machine, perfectly > integrated with the blast-2.2.15, so that the blast programs listed in > the run menu are working fine using swissprot, nr, nt, and so on... > > Now, I'm trying to work with artemis v.8 on a Ubuntu machine, but I > didn't succed with its integration with blast-2.2.15 (note that the > stand alone blast and the artemis itself are working!) > On this machine I have copied the same configuration (blast, artemis, > artemis/etc in my PATH and BLASTDB environment variable) but the run_ > commands from the run menu are still not working.... > > Usually, for e.g., I get this error: > > ERROR running blastx: > > ================= > [blastall] ERROR: No argument given for database > > I get the same error even if I run the run_ script from the terminal. > > I also tried to specify the database location in the artemis/etc/option : > > feature_dna_programs = \ > tblastx /usr/BioSW/blast-2.2.15/db \ > blastn /usr/BioSW/blast-2.2.15/db \ > blastx /usr/BioSW/blast-2.2.15/db \ > fastx %uniprot \ > clustalx DNA > > but with no success again... > > It's days I'm working on it......What's wrong? > Cheers > Stefano > _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
