Hi
How about using something like EMBOSS - maskfeat on an entry saved in
EMBL format
 
http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/maskfeat.html
 
best wishes
 
Andrew
 

________________________________

From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Tim Carver
Sent: 12 December 2007 10:41
To: Duffield Melanie L; artemis-users@sanger.ac.uk
Subject: Re: [Artemis-users] Intergenic region extraction


Hi Mel

You can use the 'Create Intron Features' option under the Create menu
and then write those to file.

Regards
Tim


On 12/12/07 09:39, "Duffield Melanie L" <[EMAIL PROTECTED]>
wrote:



        Hello, 
        
        I would like to extract all the non-coding region of sequence
from my bacterial sequence and write this out to a file.  Is there any
way of doing this in Artemis?  I can select all CDS or genes and I've
tried toggle selection but this then selects any features not previously
selected rather than DNA sequence not included.
        
        Thanks 
        
        mel 
        
        "The Information contained in this E-Mail and any subsequent
correspondence"
        "is private and is intended solely for the intended
recipient(s)."
        "For those other than the recipient any disclosure, copying,
distribution, "
        "or any action taken or omitted to be taken in reliance on such
information is"
        "prohibited and may be unlawful."
        
        
________________________________

        _______________________________________________
        Artemis-users mailing list
        Artemis-users@sanger.ac.uk
        http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
        




-- 
Disclaimer: This e-mail and any attachments are confidential and intended 
solely for the use of the recipient(s) to whom they are addressed. If you have 
received it in error, please destroy all copies and inform the sender. This 
email and any attachments are believed to be free from viruses but BBSRC 
accepts no liability in connection therewith. 

_______________________________________________
Artemis-users mailing list
Artemis-users@sanger.ac.uk
http://lists.sanger.ac.uk/mailman/listinfo/artemis-users

Reply via email to