Hi. I am searching for some information in BASE2 that I often looked at in
BASE1. I can't find it. Can you help me? This is not a migration question.
The BASE2 data is fresh test data.
 
I have a Raw bioassay and want to see what raw data file I used to create
it. I can't trace that info anywhere in the BASE2 GUI or in the API. Where
is that information hidden? 
And what happens to the raw data file when it is used to make a raw
bioassay. In BASE1 I think it was automatically copied to another place and
you could actually delete it from upload, but it would still be there
accessible from the raw bioassay page. The downside of this was a lot of
double storage. How is this handled in BASE2?
 
A common BASE1 user error is mixing up what is in ch1 and ch2.  
In problem solving, I often want to see what file format I used to parse
that raw file into a raw Bioassay. I can't find that information in BASE2.
Where is it?
 
Also i want to see what sample I assigned to ch1 and ch2. I could not find
this information in BASE2. And when I make a new hybridization and adding
two samples, I am not forced to assign the labeled extracts to channels as
in BASE1. What is the definition of ch(1) and ch(2) in BASE2? How do I now
that my ratio is A/B and not B/A? I also searched for this information in
the API.
 
Best regards
Vegard Nygaard
Software Engineer
Department of Tumor Biology (Montebello)
Rikshospitalet-Radiumhospitalet Medical Center 0310 Oslo
Bioinformatics user support (NMC)
Phone 0047 22935590



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