> We have solved this by making two different import configurations. > This ensures that the sample is always in ch1 and the reference is in > ch2 and there is no need to make a special formula to calculate the > ratio. The information about dye-swapped or not is still interesting > in the downstream analysis steps. In base1 I solved this by > "annotating" the bioassays. I just added a prefix (_cy3 or _cy5) to > the name. In base2 I would solve this by using the annotation system > and annotate the RawBioAssay dye-swap true or false. To make the > annotating a little easier we have added a ticket > (http://base.thep.lu.se/ticket/828 > ) that will enable the user to automatically annotate the RawBioAssay > depending on what configuration used to import the data.
This looks good, but the question of whether a ch1/ch2 ratio is male/female or female/male still remains open however. I can't see an easy way to slot a "channel" attribute into the schema (probably for BioMaterialEvent, but this wouldn't be relevant for the majority of events...). > > /Johan > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > basedb-devel mailing list > basedb-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/basedb-devel -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
