Hi Steve,
I haven't tried the batch data importer yet, but keep in mind that in order
to use it, you need to create a regular raw data importer for your data
type.
Jeremy
On 3/9/07, Steve Taylor <[EMAIL PROTECTED]> wrote:
Hi,
>
> Oops! I added the files from the wrong version of BASE on our server.
> I just added the correct ones.
That's great thanks!
BTW Have you got Batch Data Importer plugin working for Illumina data? I
get the following message during import:
Done: Plugin failed: java.lang.Exception: no suitable plugin
configuration found for this data type
The plugin works fine for Affy data and I can import Raw Bioassays
individually. Also the experiment I am importing into is of type 'Illumina'.
Thanks for any help,
Steve
>
> Jeremy
>
> On 3/8/07, *Steve Taylor * <[EMAIL PROTECTED]
> <mailto: [EMAIL PROTECTED]>> wrote:
>
> Hi Jeremy,
>
> > I attached the necessary files to the open ticket.
> > http://base.thep.lu.se/ticket/486
> > We may be working with some programmers soon to help us with
> specific
> > plugins, so this would definitely be something on our list of
to-dos.
> >
>
> The raw-data-types.xml and extended-properties.xml do not appear to
> be different from the standard ones in BASE. Please can you check?
>
> Thanks!
>
> Steve
>
> > Jeremy
> >
> >
> > On 3/7/07, *Nicklas Nordborg* <[EMAIL PROTECTED]
> <mailto: [EMAIL PROTECTED]>
> > <mailto:[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>>> wrote:
> >
> > Steve Taylor wrote:
> > > Hi,
> > >
> > > Can Jeremy (or anyone else) please give a link
> raw-data-types.xml
> > > they used for Illumina and perhaps the R script that was
> mentioned in
> > > this thread. I have written a perl script to do the
> splitting so it
> > > would be good to compare notes and reach a consensus. Is
> anyone on
> > > the list looking at writing the Java plugin?
> >
> > May I also remind everybody that we opened a ticket for this
> issue in
> > our issue-tracking system: http://base.thep.lu.se/ticket/486
> >
> > It is possible to upload files to the ticket if you login
> using the
> > username=base and password=base
> >
> > /Nicklas
> >
> >
>
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