Hi, > I haven't tried the batch data importer yet, but keep in mind that in > order to use it, you need to create a regular raw data importer for your > data type.
Yes. I have already imported data thanks to your 'raw-data-types.xml'. I now have worked out the problem was permissions. Even though I had defined a raw data type 'Illumina' I hadn't shared it with everyone. I can now batch import Illumina data. Thanks, Steve > > Jeremy > > On 3/9/07, *Steve Taylor* <[EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]>> wrote: > > Hi, > > > > > Oops! I added the files from the wrong version of BASE on our > server. > > I just added the correct ones. > > That's great thanks! > > BTW Have you got Batch Data Importer plugin working for Illumina > data? I get the following message during import: > > Done: Plugin failed: java.lang.Exception: no suitable > plugin configuration found for this data type > > > The plugin works fine for Affy data and I can import Raw Bioassays > individually. Also the experiment I am importing into is of type > 'Illumina'. > > Thanks for any help, > > Steve > > > > > Jeremy > > > > On 3/8/07, *Steve Taylor * < [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > <mailto: [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]>>> wrote: > > > > Hi Jeremy, > > > > > I attached the necessary files to the open ticket. > > > http://base.thep.lu.se/ticket/486 > <http://base.thep.lu.se/ticket/486> > > > We may be working with some programmers soon to help us with > > specific > > > plugins, so this would definitely be something on our list > of to-dos. > > > > > > > The raw-data-types.xml and extended-properties.xml do not > appear to > > be different from the standard ones in BASE. Please can you > check? > > > > Thanks! > > > > Steve > > > > > Jeremy > > > > > > > > > On 3/7/07, *Nicklas Nordborg* <[EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > <mailto: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>> > > > <mailto:[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]> > <mailto: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>>>> wrote: > > > > > > Steve Taylor wrote: > > > > Hi, > > > > > > > > Can Jeremy (or anyone else) please give a link > > raw-data-types.xml > > > > they used for Illumina and perhaps the R script > that was > > mentioned in > > > > this thread. I have written a perl script to do the > > splitting so it > > > > would be good to compare notes and reach a > consensus. Is > > anyone on > > > > the list looking at writing the Java plugin? > > > > > > May I also remind everybody that we opened a ticket > for this > > issue in > > > our issue-tracking system: > http://base.thep.lu.se/ticket/486 > > > > > > It is possible to upload files to the ticket if you login > > using the > > > username=base and password=base > > > > > > /Nicklas > > > > > > > > > ------------------------------------------------------------------------- > > > > > > > > Take Surveys. Earn Cash. Influence the Future of IT > > > Join SourceForge.net's Techsay panel and you'll get > the chance to > > > share your > > > opinions on IT & business topics through brief surveys-and > > earn cash > > > > > > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV> > > < > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV>> > > > < > > > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV> > > < > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV>>> > > > _______________________________________________ > > > The BASE general discussion mailing list > > > basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net> > > <mailto: basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net>> > > > <mailto:basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net> > > <mailto: basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net>>> > > > unsubscribe: send a mail with subject "unsubscribe" to > > > [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > <mailto:[EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]>> > > > <mailto: [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > <mailto:[EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]>>> > > > > > > > > > > > > > > ------------------------------------------------------------------------- > > Take Surveys. Earn Cash. Influence the Future of IT > > Join SourceForge.net's Techsay panel and you'll get the > chance to > > share your > > opinions on IT & business topics through brief surveys-and > earn cash > > > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV> > > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV>> > > _______________________________________________ > > The BASE general discussion mailing list > > basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net> > > <mailto: basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net>> > > unsubscribe: send a mail with subject "unsubscribe" to > > [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > <mailto:[EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]>> > > > > > > > > > ------------------------------------------------------------------------ > > > > > > ------------------------------------------------------------------------- > > Take Surveys. Earn Cash. Influence the Future of IT > > Join SourceForge.net's Techsay panel and you'll get the chance to > share your > > opinions on IT & business topics through brief surveys-and earn cash > > > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV> > > > > > > > ------------------------------------------------------------------------ > > > > _______________________________________________ > > The BASE general discussion mailing list > > basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net> > > unsubscribe: send a mail with subject "unsubscribe" to > > [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to > share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV> > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net> > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] > <mailto:[EMAIL PROTECTED]> > > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > > ------------------------------------------------------------------------ > > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
