Sergio Contrino wrote: > dear nicklas, > thank you for the prompt answer and apologies for the lack of info. > here the info requested. > thank you > sergio > > i am running a test base 2.3.2 on mysql 5.1.14-beta (i must apologies > again, i was thinking to be running on the reccomended 5.0) > > the stack (as in base report) is
I think I partly know what is happening. There are two problems, the first causing the second. 1. The Plier plugin is creating a root bioassayset but is never inserting any data to it. If no data is inserted, then the missing table isn't created. 2. Before everything is committed to the database the root bioassayset tries to count the number spots that has been inserted. This fails because the table isn't there and there is no check if it exists at this place. Number 2 is a bug in the BASE core and should be easy to fix. This will be included in the 2.4 release in about two weeks. Why number 1 is happening is hard to tell. The Plier plug-in seems to execute without errors. Maybe there is something wrong with the output from the the 'apt-probeset-summarize' program. In that case, the plug-in will just ignore it and continue without inserting any data. I guess the developer of the Plier plug-in knows more about this... I'll add a ticket to the BASE plug-ins site about #1. /Nicklas ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
