Thanks for quick answers. I think I got past the error now. In order to get past it I created another user with admin role and a quota different from unlimited.
>> Bob MacCallum wrote: > > I had this problem too, but had not yet got round to figuring out the > > solution. > > > Dominic Oyeniran writes: > It is very helpful to read the README.TXT file on the BasePlugins > download page before using the tab2mage importer plugin to avoid any > issues /problems. I did read the README file as most people would. Nevertheless I got problems. > > The direct link to the file as stated in the last email is : > http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImp > orter/README.txt. And it is also linked from http://lev.thep.lu.se/trac/baseplugins/wiki/uk.ac.ebi.Tab2MageImporter But the readme file is not very precise about this problem, it "advices" me not to use root. I disregarded that advice :(. If it will only run as a non-root user with a limited quota, that should be stated as an imperative. You could also add something under the "Limitations and Known Issues" section. Anyways, I got past that problem now but ran into another one. "Error: IMPORT FAILS: The tab2mage file supplied is not compliant with the tab2mage specification" I use the genepix example zip file. If this is another known issue please let me know, if not I will look more into it in detail tomorrow and let you know if I am stuck. Best Regards Vegard. > > Just an information for other interested users too. > > Thanks, > > ¬Dominic > > > > > > Dominic Oyeniran writes: > > > > > > vegard nygaard wrote: > > > > I am trying out the Tab2Mage importer. When starting it from the > "import" > > > > button in an experiment it quickly returns with an error. I am > running it as > > > > root on base2.4.3 having added tab2mage importer and Annotation > Type and CV > > > > Loader as plug-ins. Input file is the genepix example file found at > > > > http://www.ebi.ac.uk/~oyeniran/pages/download.html. This is output > from the > > > > plugin window: > > > > > > > > Name Run plugin: Tab2Mage Importer > > > > Description > > > > Priority 4 (1 = highest, 10 = lowest) > > > > Status Error: IMPORT FAILS: The directory containing the unzipped > files > > > > could not be found. You may NOT have sufficient Disk Space > > > > Percent complete > > > > 100% > > > > > > This is a known issue and has been documented here: > > > > http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImp > orter/README.txt. > > > Please scroll to the usage section right after the installation > section. > > > > > > Simply, we recommend not running the importer as the root user. > > > I believe it's advisable to run BASE as an administrator and not the > > > root user as well. > > > > > > In the next release of the importer, a root user will be able to run > the > > > importer as well. > > > > > > > In my efforts to solve the problem I wanted to inspect the code but > was > > > > unable to find the java files referred in the stack trace. Where > can I find > > > > them? In the jar file I found only class files. I downloaded the > whole > > > > Nutribase-2.0.2-src.zip, but was unable to unpack the file > properly. Are the > > > > source files for the importer inside and if so how do I unpack the > zip file? > > > > > > The source file for the importer is available at: > > > > http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImp > orter/src/uk/ > > > > > > > > > --------------------------------------------------------------------- > ---- > > > This SF.net email is sponsored by: Splunk Inc. > > > Still grepping through log files to find problems? Stop. > > > Now Search log events and configuration files using AJAX and a > browser. > > > Download your FREE copy of Splunk now >> http://get.splunk.com/ > > > _______________________________________________ > > > The BASE general discussion mailing list > > > basedb-users@lists.sourceforge.net > > > unsubscribe: send a mail with subject "unsubscribe" to > > > [EMAIL PROTECTED] > > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
