Hi there Could I trouble someone to give me a very brief walk-through as to how BASE1PluginExecutor should be configured?
I want to use the MGH plugins described here: http://pga.mgh.harvard.edu/Parabiosys/resources/software_tools/base_plugins.php I've downloaded and copied the perl scripts into <base-dir>/www/plugins/molbio.mgh.harvard.edu-dpark/ But how do I hook up the perl scripts and the supplied definition files into BASE 2.5.0 ? Here is an example definition file: BASEfile section plugin uniqueName molbio.mgh.harvard.edu/dpark/limitint versionNumber 1.1.1 name MGH: limit intensity descr Enforces a minimum value for spot intensities. Replaces all intensities below the min value specified below with that min value. Implemented in Perl by [EMAIL PROTECTED] execName molbio.mgh.harvard.edu/dpark/basefile-general.pl usedColumns position\treporter\treporterId usedFields _allIntensities geneAverages 0 serialFormat 0 url minChannels 1 maxChannels 0 leaveStdin 0 leaveStdout 0 columns position valueType name commonName options defaultValue enumOptions removed % 1 h plugin limitint 0 2 f minval min value 4 50 0 I presume I need to point BASE1PluginExecutor at this file somehow? Alternatively, are there any other plugins which will perform Fold Ratio and p-value tests? Many thanks for your tiem! Nick. ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
