Hi Jari, thank you for your reply. Jari Häkkinen ha scritto: >> Good Morning All, >> >> I have a lot of Affymetrix array data that I would like to analyze together. >> The zip that contains these files is very big and I can't upload it to >> BASE to use Batch Data Importer to import it into my experiment. >> > > There is a known issue with files larger than 2GB, > http://base.thep.lu.se/ticket/841 > Is your file larger than 2GB? There is a thread related to this issue, > http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg01464.html > The resolution in this thread did not help the original poster but it > might help you. > > >
Yes, I read these, and I'm using an user with unlimted quota. I can't use Tab2MageImporter because I'm using base 2.6.3, and at the moment I want to load only raw data, not a whole experiment complete. >> It would be beautiful if were possible to add to an experiment raw >> bioassays that uses the same Array Design used by existing raw bioassays. >> Are there any plans to implement such a feature? >> > > > There is the batch data importer, > http://baseplugins.thep.lu.se/wiki/uk.ac.scri.batchimporter, that you > already refer to above. Also, there is the tab2mage importer, > http://baseplugins.thep.lu.se/wiki/uk.ac.ebi.Tab2MageImporter, but I > think it is still immature. > > We may have a look at the batch data importer in the future to see if we > can improve and customize it for our core facility needs. However, I > cannot give any time projections for this work. > > In principle the current batch data importer should be usable even if > smaller than 2GB files are used for data upload. Split the zip-file to > reasonable size, use the plug-in. This will create a lot of raw > bioassays and assign them to the experiment you selected to import from. > > > Jari > If my file is much bigger than 2GB, is a very long task to import in base the splitted files, but I think that I will do in this way Thank you Jari Cheers, Ilenia ------------------------------------------------------------------------- Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
