Hi again, > Are you sure that everything is correctly linked? Use the "Experiment > overview" to find out. It should find > > 1) The raw bioassay(s) that doesn't have the annotation. > 2) The raw bioassays that has inherited the same annotation from > multiple parents. > > Maybe it is as simple as re-linking one or more parents from the raw > bioassays in 2) to the raw bioassays in 1). > > /Nicklas
No, I have checked and things seem correctly linked, but all the raw bioassays have inherited two factor values for the experimental factor (and this is indeed being flagged up by the experiment overview). The data I am trying to import is just made up example data for a fictitious two-colour experiment (see below). I have 4 raw bioassays, two from a mutant, two from a wildtype, but both of them inherit both "mutant" and "wildtype" as their factor value, although they are correctly linked upwards to their respective biosource. Could the problem be coming from the fact that in two-colour experiments there is not a straight, one-to-one line of inheritance from the BioSource to the RawBioAssay? I have a suspicion that the problem comes from having two labelled extracts (which come from two different biosources) used in the same hybridization, which may then pass these both on downstream to the raw bioassay. Cheers Micha ============== Raw data follows: RawBioAssay ArrayBatch ArraySlide Scan Hybridization LabeledExtract Dye Extract Sample BioSource StrainOrLine RBA1 batch 1 slide 1 scan hyb1 hyb1 mutant1.s1.e1.le1 cy5 mutant1.s1.e1 mutant1.s1 mutant1 mutant RBA2 batch 1 slide 1 scan hyb1 hyb1 wildtype1.s1.e1.le1 cy3 wildtype1.s1.e1 wildtype1.s1 wildtype1 wildtype RBA3 batch 1 slide 2 scan hyb2 hyb2 mutant1.s1.e1.le1 cy5 mutant1.s1.e1 mutant1.s1 mutant1 mutant RBA4 batch 1 slide 2 scan hyb2 hyb2 wildtype1.s1.e1.le1 cy3 wildtype1.s1.e1 wildtype1.s1 wildtype1 wildtype ______________________________________________________________________ SCRI, Invergowrie, Dundee, DD2 5DA. The Scottish Crop Research Institute is a charitable company limited by guarantee. Registered in Scotland No: SC 29367. Recognised by the Inland Revenue as a Scottish Charity No: SC 006662. DISCLAIMER: This email is from the Scottish Crop Research Institute, but the views expressed by the sender are not necessarily the views of SCRI and its subsidiaries. This email and any files transmitted with it are confidential to the intended recipient at the e-mail address to which it has been addressed. It may not be disclosed or used by any other than that addressee. If you are not the intended recipient you are requested to preserve this confidentiality and you must not use, disclose, copy, print or rely on this e-mail in any way. Please notify [EMAIL PROTECTED] quoting the name of the sender and delete the email from your system. Although SCRI has taken reasonable precautions to ensure no viruses are present in this email, neither the Institute nor the sender accepts any responsibility for any viruses, and it is your responsibility to scan the email and the attachments (if any). ______________________________________________________________________ ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
