Dear List
I'm trying to install BASE 2.8.4 on a new server.
We have Java 1.6 but I think it is the Red Hat OpenJDK version. We also
have MySQL 5.0.45
Any clues appreciated!
When I run initdb.sh I get:
--System information-----------------------------
BASE : 2.8.4
Database :
jdbc:mysql://localhost/base2?useCursorFetch=true&defaultFetchSize=100&us
eServerPrepStmts=true
Dialect : org.hibernate.dialect.MySQLInnoDBDialect
JDBC : com.mysql.jdbc.Driver; version 5.1
Java : OpenJDK Runtime Environment; 1.6.0-b09; Sun Microsystems
Inc.
OS : Linux; amd64; 2.6.18-92.el5
-------------------------------------------------
Building database..........
Database built successfully.
Initialising database...
--Creating quota types...
--Creating quota...
--Creating roles...
--Creating users...
--Creating groups...
--Creating keys...
--Creating protocol types...
--Creating hardware types...
--Creating hardware...
--Creating software types...
--Creating software...
--Creating directories...
--Creating file types...
--Creating MIME types...
--Creating plate geometries...
--Creating plate mappings...
--Creating labels...
--Creating annotation types...
--Creating clients...
--Creating news...
--Creating plugin definitions...
--Creating example plugin configurations...
--Creating formulas...
--Creating job agents...
--Creating data file types...
--Creating platforms...
Database initialised successfully.
Updating database...
Database updated successfully.
Installing web application...
net.sf.basedb.core.BaseException: could not insert:
[net.sf.basedb.core.data.HelpData]
at
net.sf.basedb.plugins.HelpImporter.doImport(HelpImporter.java:395)
at
net.sf.basedb.plugins.HelpImporter.installHelpTexts(HelpImporter.java:47
8)
at
net.sf.basedb.install.Webclient.installHelpTexts(Webclient.java:196)
at net.sf.basedb.install.Webclient.install(Webclient.java:155)
at net.sf.basedb.install.InitDB.main(InitDB.java:81)
Caused by: net.sf.basedb.core.BaseException: could not insert:
[net.sf.basedb.core.data.HelpData]
at
net.sf.basedb.core.HibernateUtil.saveData(HibernateUtil.java:1065)
at net.sf.basedb.core.DbControl.commit(DbControl.java:381)
at
net.sf.basedb.plugins.HelpImporter.doImport(HelpImporter.java:386)
... 4 more
Caused by: org.hibernate.exception.GenericJDBCException: could not
insert: [net.sf.basedb.core.data.HelpData]
at
org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQ
LStateConverter.java:103)
at
org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java
:91)
at
org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.
java:43)
at
org.hibernate.id.insert.AbstractReturningDelegate.performInsert(Abstract
ReturningDelegate.java:40)
at
org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEn
tityPersister.java:2158)
at
org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEn
tityPersister.java:2638)
at
org.hibernate.action.EntityIdentityInsertAction.execute(EntityIdentityIn
sertAction.java:48)
at
org.hibernate.engine.ActionQueue.execute(ActionQueue.java:250)
at
org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate
(AbstractSaveEventListener.java:298)
at
org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSa
veEventListener.java:181)
at
org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(Ab
stractSaveEventListener.java:107)
at
org.hibernate.event.def.DefaultSaveOrUpdateEventListener.saveWithGenerat
edOrRequestedId(DefaultSaveOrUpdateEventListener.java:187)
at
org.hibernate.event.def.DefaultSaveEventListener.saveWithGeneratedOrRequ
estedId(DefaultSaveEventListener.java:33)
at
org.hibernate.event.def.DefaultSaveOrUpdateEventListener.entityIsTransie
nt(DefaultSaveOrUpdateEventListener.java:172)
at
org.hibernate.event.def.DefaultSaveEventListener.performSaveOrUpdate(Def
aultSaveEventListener.java:27)
at
org.hibernate.event.def.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(
DefaultSaveOrUpdateEventListener.java:70)
at org.hibernate.impl.SessionImpl.fireSave(SessionImpl.java:535)
at org.hibernate.impl.SessionImpl.save(SessionImpl.java:523)
at org.hibernate.impl.SessionImpl.save(SessionImpl.java:519)
at
net.sf.basedb.core.HibernateUtil.saveData(HibernateUtil.java:1056)
... 6 more
Caused by: java.sql.SQLException: Incorrect string value: '\xD7</lbl...'
for column 'description' at row 1
at
com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1055)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3491)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3423)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1936)
at
com.mysql.jdbc.ServerPreparedStatement.serverExecute(ServerPreparedState
ment.java:1328)
at
com.mysql.jdbc.ServerPreparedStatement.executeInternal(ServerPreparedSta
tement.java:838)
at
com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:20
19)
at
com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:19
37)
at
com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:19
22)
at
com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeUpdate(NewProx
yPreparedStatement.java:105)
at
org.hibernate.id.IdentityGenerator$GetGeneratedKeysDelegate.executeAndEx
tract(IdentityGenerator.java:73)
at
org.hibernate.id.insert.AbstractReturningDelegate.performInsert(Abstract
ReturningDelegate.java:33)
... 22 more
Head of Bioinformatics
Institute for Animal Health
Compton
Berks
RG20 7NN
01635 578411
Please consider the environment and don't print this e-mail unless you
really need to.
The information contained in this message may be confidential or legally
privileged and is intended solely for the addressee. If you have
received this message in error please delete it & notify the originator
immediately. Unauthorised use, disclosure, copying or alteration of
this message is forbidden & may be unlawful. The contents of this
e-mail are the views of the sender and do not necessarily represent the
views of the Institute. This email, and associated attachments, has
been checked locally for viruses but we can accept no responsibility
once it has left our systems. Communications on Institute computers are
monitored to secure the effective operation of the systems and for other
lawful purposes.
The Institute for Animal Health is a company limited by guarantee,
registered in England no. 559784.
The Institute is also a registered charity, Charity Commissioners
Reference No. 228824
------------------------------------------------------------------------------
The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
production scanning environment may not be a perfect world - but thanks to
Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700
Series Scanner you'll get full speed at 300 dpi even with all image
processing features enabled. http://p.sf.net/sfu/kodak-com
_______________________________________________
The BASE general discussion mailing list
basedb-users@lists.sourceforge.net
unsubscribe: send a mail with subject "unsubscribe" to
basedb-users-requ...@lists.sourceforge.net
