Hello,
The stacktrace for the issue is below. Thank you so much for taking the time
to help.
Abhishek
experiment: Experiment[id=102; name=groner]
file selected: Groner.zip
zipFile is located in dir Directory[id=23; name=dhglab03]
new subDir = Groner110509_155651
quotaValue for user User[id=1; name=Root] = -1
currentDiskUsage = 942474865
remainingSpace = -942474866
zipFileSize = 170749391
unpacking
May 11, 2009 3:56:58 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:57:08 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:57:18 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
numUnpackedFiles = 17
BatchDataImport importData
dir = Groner110509_155651
rawDataType = Affymetrix
instantiating dataFiles array of length 16
affy data -- iterating over file names
file name = 128238-128234.CEL, extension = CEL
setting dataFiles[0] to file 128238-128234.CEL
file name = 113177-108460.CEL, extension = CEL
setting dataFiles[1] to file 113177-108460.CEL
file name = 113168-108451.CEL, extension = CEL
setting dataFiles[2] to file 113168-108451.CEL
file name = 113163-108446.CEL, extension = CEL
setting dataFiles[3] to file 113163-108446.CEL
file name = 113162-108445.CEL, extension = CEL
setting dataFiles[4] to file 113162-108445.CEL
file name = 113166-108449.CEL, extension = CEL
setting dataFiles[5] to file 113166-108449.CEL
file name = 113167-108450.CEL, extension = CEL
setting dataFiles[6] to file 113167-108450.CEL
file name = 113169-108452.CEL, extension = CEL
setting dataFiles[7] to file 113169-108452.CEL
file name = 113172-108455.CEL, extension = CEL
setting dataFiles[8] to file 113172-108455.CEL
file name = 113170-108453.CEL, extension = CEL
setting dataFiles[9] to file 113170-108453.CEL
file name = 108461-108444.CEL, extension = CEL
setting dataFiles[10] to file 108461-108444.CEL
file name = 113171-108454.CEL, extension = CEL
setting dataFiles[11] to file 113171-108454.CEL
file name = 113173-108456.CEL, extension = CEL
setting dataFiles[12] to file 113173-108456.CEL
file name = 113174-108457.CEL, extension = CEL
setting dataFiles[13] to file 113174-108457.CEL
file name = 128235-128231.CEL, extension = CEL
setting dataFiles[14] to file 128235-128231.CEL
file name = 128237-128233.CEL, extension = CEL
setting dataFiles[15] to file 128237-128233.CEL
file name = 128236-128232.CEL, extension = CEL
setting dataFiles[16] to file 128236-128232.CEL
java.lang.ArrayIndexOutOfBoundsException: 16
at sbrn.base.BatchDataImport.importData(BatchDataImport.java:297)
at sbrn.base.BatchDataImporter.run(BatchDataImporter.java:137)
at
net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:110)
at
net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:506)
at java.lang.Thread.run(Thread.java:619)
May 11, 2009 3:57:28 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:57:38 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:57:48 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:57:58 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:58:08 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:58:18 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:58:28 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:58:38 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:58:48 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:58:59 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:59:09 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:59:19 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:59:29 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:59:39 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:59:49 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 3:59:59 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
May 11, 2009 4:00:09 PM org.apache.catalina.startup.HostConfig
deployDescriptor
SEVERE: Error deploying configuration descriptor base-2.11.0.xml
Message: 4
Date: Mon, 11 May 2009 07:53:13 +0200
From: Nicklas Nordborg <nick...@thep.lu.se>
Subject: Re: [base] batch data importer
To: BASE ML <basedb-users@lists.sourceforge.net>
Message-ID: <4a07bd49.6090...@thep.lu.se>
Content-Type: text/plain; charset=ISO-8859-1
Abhishek Goel wrote:
> Hello,
>
> I'm a programmer with the Geschwind Lab at UCLA trying to fix some
> issues with our installation of BASE. I'm having a problem with the
> batch data importer plugin. When trying to import a zip file into BASE
> using the batch data importer plugin, I receive the following error:
>
> Plugin failed: java.lang.ArrayIndexOutOfBoundsException: 16
Can you submit the complete stacktrace?
/Nicklas
------------------------------
--
Abhishek Goel
Programmer Analyst
Geschwind Laboratory, UCLA Neurology
Gonda Neuroscience and Genetics Research Center #2309
University of California Los Angeles
695 Charles E. Young Dr. South
Los Angeles, CA 90095
Tel: (310) 794-7537
Fax: (310) 267-2401
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