Abhishek Goel wrote: > Hello, > > The stacktrace for the issue is below. Thank you so much for taking the > time to help.
Thanks for the extra info. Unfortunately I am not able to give much help you with this since the plug-in is an external contribution. Have you checked the readme? http://baseplugins.thep.lu.se/browser/plugins/base2/uk.ac.scri.batchimporter/trunk/README.txt It says something about "cdf file which needs to be included in the zip file" but it seems like you zip file only includes cel files. Can this be the problem? /Nicklas > > Abhishek > > > > experiment: Experiment[id=102; name=groner] > file selected: Groner.zip > zipFile is located in dir Directory[id=23; name=dhglab03] > new subDir = Groner110509_155651 > quotaValue for user User[id=1; name=Root] = -1 > currentDiskUsage = 942474865 > remainingSpace = -942474866 > zipFileSize = 170749391 > unpacking > May 11, 2009 3:56:58 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:57:08 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:57:18 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > numUnpackedFiles = 17 > BatchDataImport importData > dir = Groner110509_155651 > rawDataType = Affymetrix > instantiating dataFiles array of length 16 > affy data -- iterating over file names > file name = 128238-128234.CEL, extension = CEL > setting dataFiles[0] to file 128238-128234.CEL > file name = 113177-108460.CEL, extension = CEL > setting dataFiles[1] to file 113177-108460.CEL > file name = 113168-108451.CEL, extension = CEL > setting dataFiles[2] to file 113168-108451.CEL > file name = 113163-108446.CEL, extension = CEL > setting dataFiles[3] to file 113163-108446.CEL > file name = 113162-108445.CEL, extension = CEL > setting dataFiles[4] to file 113162-108445.CEL > file name = 113166-108449.CEL, extension = CEL > setting dataFiles[5] to file 113166-108449.CEL > file name = 113167-108450.CEL, extension = CEL > setting dataFiles[6] to file 113167-108450.CEL > file name = 113169-108452.CEL, extension = CEL > setting dataFiles[7] to file 113169-108452.CEL > file name = 113172-108455.CEL, extension = CEL > setting dataFiles[8] to file 113172-108455.CEL > file name = 113170-108453.CEL, extension = CEL > setting dataFiles[9] to file 113170-108453.CEL > file name = 108461-108444.CEL, extension = CEL > setting dataFiles[10] to file 108461-108444.CEL > file name = 113171-108454.CEL, extension = CEL > setting dataFiles[11] to file 113171-108454.CEL > file name = 113173-108456.CEL, extension = CEL > setting dataFiles[12] to file 113173-108456.CEL > file name = 113174-108457.CEL, extension = CEL > setting dataFiles[13] to file 113174-108457.CEL > file name = 128235-128231.CEL, extension = CEL > setting dataFiles[14] to file 128235-128231.CEL > file name = 128237-128233.CEL, extension = CEL > setting dataFiles[15] to file 128237-128233.CEL > file name = 128236-128232.CEL, extension = CEL > setting dataFiles[16] to file 128236-128232.CEL > java.lang.ArrayIndexOutOfBoundsException: 16 > at sbrn.base.BatchDataImport.importData(BatchDataImport.java:297) > at sbrn.base.BatchDataImporter.run(BatchDataImporter.java:137) > at > net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:110) > at > net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:506) > at java.lang.Thread.run(Thread.java:619) > May 11, 2009 3:57:28 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:57:38 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:57:48 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:57:58 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:58:08 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:58:18 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:58:28 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:58:38 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:58:48 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:58:59 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:59:09 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:59:19 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:59:29 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:59:39 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:59:49 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 3:59:59 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > May 11, 2009 4:00:09 PM org.apache.catalina.startup.HostConfig > deployDescriptor > SEVERE: Error deploying configuration descriptor base-2.11.0.xml > > > Message: 4 > Date: Mon, 11 May 2009 07:53:13 +0200 > From: Nicklas Nordborg <nick...@thep.lu.se <mailto:nick...@thep.lu.se>> > Subject: Re: [base] batch data importer > To: BASE ML <basedb-users@lists.sourceforge.net > <mailto:basedb-users@lists.sourceforge.net>> > Message-ID: <4a07bd49.6090...@thep.lu.se > <mailto:4a07bd49.6090...@thep.lu.se>> > Content-Type: text/plain; charset=ISO-8859-1 > > Abhishek Goel wrote: >> Hello, >> >> I'm a programmer with the Geschwind Lab at UCLA trying to fix some >> issues with our installation of BASE. I'm having a problem with the >> batch data importer plugin. When trying to import a zip file into BASE >> using the batch data importer plugin, I receive the following error: >> >> Plugin failed: java.lang. > ArrayIndexOutOfBoundsException: 16 > > Can you submit the complete stacktrace? > > /Nicklas > > > > ------------------------------ > > > -- > Abhishek Goel > Programmer Analyst > Geschwind Laboratory, UCLA Neurology > Gonda Neuroscience and Genetics Research Center #2309 > University of California Los Angeles > 695 Charles E. Young Dr. South > Los Angeles, CA 90095 > Tel: (310) 794-7537 > Fax: (310) 267-2401 > > > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your > production scanning environment may not be a perfect world - but thanks to > Kodak, there's a perfect scanner to get the job done! 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