HI All,
I have 2 sets of files I want to compare,and I don't know where to start
to get what I want :(
I have a reference file ( see ref for example) with a chromosome name, a
start and a end position
Chr7 115249090 115859515
Chr8 25255496 29565459
Chr13 198276698 298299815
ChrX 109100951 109130998
and I have a file (file_test) file I want to parse against this
reference ref.txt
Chr1 115249098
Chr1 1362705
Chr8 25255996
Chr8 1362714
Chr1 1362735
ChrX 109100997
So if the position on the file_test is found in ref_file it is kept in a
new file, if not discarded.
I am looking for advises /modules I could use to compare those 2 files .
many thanks in advance for any tips
Nat
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