Hi all,
Hello and Welcome to the world of bioinformatics with perl!
...
I think you should take a look at bioperl since this is genome data, for this exercise it's not what you want, but if you want to do more biology whith perl (blast, interfacing with databases, easy format conversion, and so on, and so forth...). Bioperl can be found at http://www.bioperl.org/
***FILE 1*** >cat atacta--gat--acgt- ac-ac-ggttta-ca--
...
Again, I do NOT want this solved for me (unless I am totally lost). Otherwise, I'll never learn. I would just like either hints / suggestions / pseudo code / even links to books or sites that discuss this particular topic. Meanwhile, I am eagerly awaiting my "PERL Cookbook" and I'll keep searching the web.
So this was more like a link ;)
-Thanks! -Mike
/Johan Viklund
Ps. <off-topic> Next exercise (or really the one before) would be to calculate the GC-skew. </off-topic>
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