> >I can't install this DESEq2 on the RHEL 5.5 server: > > > >* installing *source* package ‘RcppArmadillo’ ... > >** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked > >* checking LAPACK_LIBS: divide-and-conquer complex SVD unavailable via R- > >supplied LAPACK > >* divide-and-conquer algorithm for complex SVD will be redirected to default > >** libs > >g++ -I/illumina/software/PROG/R302/lib64/R/include -DNDEBUG - > >I/usr/local/include -I" > >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include" -I.. /inst/include > - > >fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o > >In file included from ../inst/include/armadillo:42, > > from ../inst/include/RcppArmadilloForward.h:37, > > from ../inst/include/RcppArmadillo.h:30, > > from RcppArmadillo.cpp:22: > >../inst/include/armadillo_bits/compiler_setup.hpp:119:6: error: #error "*** > >Need a newer compiler ***" > >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: In > >member function ‘void Rcpp::Date::update_tm()’: > >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: 108: > >- Ignored: > >warning: converting to ‘time_t’ from ‘double’ > >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: In > >function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: > >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: 139: > >warning: converting to ‘time_t’ from ‘double’ > >make: *** [RcppArmadillo.o] Error 1 > >ERROR: compilation failed for package ‘RcppArmadillo’ > >* removing ‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadilloâ €™ > >* restoring previous > >‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo’ > > > >The downloaded source packages are in > > ‘/tmp/Rtmp30ZzKT/downloaded_packages’ > >Updating HTML index of packages in '.Library' > >Making 'packages.html' ... done > >Warning messages: > >1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > > installation of package ‘RcppArmadillo’ had non-zero exit status > >2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > > installation of package ‘DESeq2’ had non-zero exit status > >3: In install.packages(update[instlib == l, "Package"], l, contriburl > > > >sessionInfo() > >R version 3.0.2 (2013-09-25) > >Platform: x86_64-unknown-linux-gnu (64-bit) > > > >locale: > > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > >[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > > >attached base packages: > >[1] stats graphics grDevices utils datasets methods base > > > >other attached packages: > >[1] BiocInstaller_1.12.1 > > > >loaded via a namespace (and not attached): > >[1] tools_3.0. > >Any Idea how can resolve? > > > > > > > >- Done. > >
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