hi Jarod, What version of Rcpp and RcppArmadillo is installed?
Mike On Wed, Jun 18, 2014 at 11:35 AM, jarod...@libero.it <jarod...@libero.it> wrote: > >> >I can't install this DESEq2 on the RHEL 5.5 server: >> > >> >* installing *source* package ‘RcppArmadillo’ ... >> >** package ‘RcppArmadillo’ successfully unpacked and MD5 sums > checked >> >* checking LAPACK_LIBS: divide-and-conquer complex SVD unavailable via > R- >> >supplied LAPACK >> >* divide-and-conquer algorithm for complex SVD will be redirected to > default >> >** libs >> >g++ -I/illumina/software/PROG/R302/lib64/R/include -DNDEBUG - >> >I/usr/local/include -I" >> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include" -I.. > /inst/include >> - >> >fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o >> >In file included from ../inst/include/armadillo:42, >> > from ../inst/include/RcppArmadilloForward.h:37, >> > from ../inst/include/RcppArmadillo.h:30, >> > from RcppArmadillo.cpp:22: >> >../inst/include/armadillo_bits/compiler_setup.hpp:119:6: error: #error > "*** >> >Need a newer compiler ***" >> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: > In >> >member function ‘void Rcpp::Date::update_tm()’: >> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: > 108: >> >>- Ignored: >> >warning: converting to ‘time_t’ from ‘double’ >> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: > In >> >function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: >> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: > 139: >> >warning: converting to ‘time_t’ from ‘double’ >> >make: *** [RcppArmadillo.o] Error 1 >> >ERROR: compilation failed for package ‘RcppArmadillo’ >> >* removing ‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadilloâ > €™ >> >* restoring previous >> >‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo’ >> > >> >The downloaded source packages are in >> > ‘/tmp/Rtmp30ZzKT/downloaded_packages’ >> >Updating HTML index of packages in '.Library' >> >Making 'packages.html' ... done >> >Warning messages: >> >1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : >> > installation of package ‘RcppArmadillo’ had non-zero exit status >> >2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : >> > installation of package ‘DESeq2’ had non-zero exit status >> >3: In install.packages(update[instlib == l, "Package"], l, contriburl >> > >> >sessionInfo() >> >R version 3.0.2 (2013-09-25) >> >Platform: x86_64-unknown-linux-gnu (64-bit) >> > >> >locale: >> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >> > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C >> > [9] LC_ADDRESS=C LC_TELEPHONE=C >> >[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> > >> >attached base packages: >> >[1] stats graphics grDevices utils datasets methods > base >> > >> >other attached packages: >> >[1] BiocInstaller_1.12.1 >> > >> >loaded via a namespace (and not attached): >> >[1] tools_3.0. >> >Any Idea how can resolve? >> > >> > >> >> >> >>- Done. >> >> > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel