Thanks for your help I have the 2.0 when i try to install 3.8 I have the error on version of gcc on Rhel5.5
>----Messaggio originale---- >Da: michaelisaiahl...@gmail.com >Data: 18/06/2014 17.44 >A: "jarod...@libero.it"<jarod...@libero.it> >Cc: "bioc-devel@r-project.org"<bioc-devel@r-project.org> >Ogg: Re: [Bioc-devel] Problem on Installation of DEseq2 > >hi Jarod, > >What version of Rcpp and RcppArmadillo is installed? > >Mike > >On Wed, Jun 18, 2014 at 11:35 AM, jarod...@libero.it <jarod...@libero.it> wrote: >> >>> >I can't install this DESEq2 on the RHEL 5.5 server: >>> > >>> >* installing *source* package ‘RcppArmadillo’ ... >>> >** package ‘RcppArmadillo’ successfully unpacked and MD5 sums >> checked >>> >* checking LAPACK_LIBS: divide-and-conquer complex SVD unavailable via >> R- >>> >supplied LAPACK >>> >* divide-and-conquer algorithm for complex SVD will be redirected to >> default >>> >** libs >>> >g++ -I/illumina/software/PROG/R302/lib64/R/include -DNDEBUG - >>> >I/usr/local/include -I" >>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include" -I.. >> /inst/include >>> - >>> >fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o >>> >In file included from ../inst/include/armadillo:42, >>> > from ../inst/include/RcppArmadilloForward.h:37, >>> > from ../inst/include/RcppArmadillo.h:30, >>> > from RcppArmadillo.cpp:22: >>> >../inst/include/armadillo_bits/compiler_setup.hpp:119:6: error: #error >> "*** >>> >Need a newer compiler ***" >>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >> In >>> >member function ‘void Rcpp::Date::update_tm()’: >>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >> 108: >>> >>>- Ignored: >>> >warning: converting to ‘time_t’ from ‘double’ >>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >> In >>> >function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: >>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >> 139: >>> >warning: converting to ‘time_t’ from ‘double’ >>> >make: *** [RcppArmadillo.o] Error 1 >>> >ERROR: compilation failed for package ‘RcppArmadillo’ >>> >* removing â €˜/illumina/software/PROG/R302/lib64/R/library/RcppArmadilloâ >> €™ >>> >* restoring previous >>> >‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo’ >>> > >>> >The downloaded source packages are in >>> > ‘/tmp/Rtmp30ZzKT/downloaded_packages’ >>> >Updating HTML index of packages in '.Library' >>> >Making 'packages.html' ... done >>> >Warning messages: >>> >1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : >>> > installation of package ‘RcppArmadillo’ had non-zero exit status >>> >2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : >>> > installation of package ‘DESeq2’ had non-zero exit status >>> >3: In install.packages(update[instlib == l, "Package"], l, contriburl >>> > >>> >sessionInfo() >>> >R version 3.0.2 (2013-09-25) >>> >Platform: x86_64-unknown-linux-gnu (64-bit) >>> > >>> >locale: >>> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >>> > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >>> > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >>> > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C >>> > [9] LC_ADDRESS=C LC_TELEPHONE=C >>> >[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >>> > >>> >attached base packages: >>> >[1] stats graphics grDevices utils datasets methods >> base >>> > >>> >other attached packages: >>> >[1] BiocInstaller_1.12.1 >>> > >>> >loaded via a namespace (and not attached): >>> >[1] tools_3.0. >>> >Any Idea how can resolve? >>> > >>> > >>> >>> >>> >>>- Done. >>> >>> >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel