I would recommend looking at existing vignettes, for example minfi, but there are tons of them.
On Thu, Aug 7, 2014 at 12:38 PM, Kevin Rue-Albrecht <[email protected] > wrote: > Dear all, > > My name is Kevin Rue-Albrecht and I am working to improve a package > currently in review by Bioconductor. I am blocked while trying to add the > final touch to the package. > > I was wondering about the recommended way of inserting bibliographic > references in the body of the package vignette using R Studio to build > the source package. > > I am developing the package using R Studio on a standard Linux Ubuntu 12.04 > distribution. The package contains a Sweave vignette (.Rnw file) which > succesfully compiles on the Bioconductor package tracker with bits of R > code and bits of LaTeX. > > So far, I have only found this page which confuses me for different reasons > ( > > http://texblog.org/2013/08/20/rknitr-automatic-bibliography-generation-with-biblatex-in-rstudio/ > ): > > - It refers to the knitr type of vignette, not the Sweave that I have > used so far > - At some point the person writes "tell RStudio where to find the .tex, > .bib and .bst files" > - In the minimal example, he seems to include the .bib file into the > source of the vignette file. I probably should not do that with many > references. > > I haven't found the information in the "Writing R Extensions" page, the > Bioconductor pacakge guidelines or the archives of this mailing list. > > > - Can anyone point me to a place where my question might be already > answered that I haven't found yet? > - Or can anyone tell me how to store the references (probably in a > separate file), and how to refer to them in the .Rnw vignette file so > that > it compiles properly on the Bioconductor servers? > > > Many thanks in advance ! > > Best regards, > Kevin > > > -- > Kévin RUE-ALBRECHT > Wellcome Trust Computational Infection Biology PhD Programme > University College Dublin > Ireland > http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en > > [[alternative HTML version deleted]] > > > _______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > [[alternative HTML version deleted]]
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