It seemed to me that this question concerned how to do this in Rstudio specifically, if you are using it as the sole development environment, so I do not really have an example but I think uploading the relevant .bib file to the vignettes directory would be appropriate and it may well be that the builder will automatically run bibtex.
On Thu, Aug 7, 2014 at 1:36 PM, Kasper Daniel Hansen < [email protected]> wrote: > I would recommend looking at existing vignettes, for example minfi, but > there are tons of them. > > > On Thu, Aug 7, 2014 at 12:38 PM, Kevin Rue-Albrecht < > [email protected] > > wrote: > > > Dear all, > > > > My name is Kevin Rue-Albrecht and I am working to improve a package > > currently in review by Bioconductor. I am blocked while trying to add the > > final touch to the package. > > > > I was wondering about the recommended way of inserting bibliographic > > references in the body of the package vignette using R Studio to build > > the source package. > > > > I am developing the package using R Studio on a standard Linux Ubuntu > 12.04 > > distribution. The package contains a Sweave vignette (.Rnw file) which > > succesfully compiles on the Bioconductor package tracker with bits of R > > code and bits of LaTeX. > > > > So far, I have only found this page which confuses me for different > reasons > > ( > > > > > http://texblog.org/2013/08/20/rknitr-automatic-bibliography-generation-with-biblatex-in-rstudio/ > > ): > > > > - It refers to the knitr type of vignette, not the Sweave that I have > > used so far > > - At some point the person writes "tell RStudio where to find the > .tex, > > .bib and .bst files" > > - In the minimal example, he seems to include the .bib file into > the > > source of the vignette file. I probably should not do that with > many > > references. > > > > I haven't found the information in the "Writing R Extensions" page, the > > Bioconductor pacakge guidelines or the archives of this mailing list. > > > > > > - Can anyone point me to a place where my question might be already > > answered that I haven't found yet? > > - Or can anyone tell me how to store the references (probably in a > > separate file), and how to refer to them in the .Rnw vignette file so > > that > > it compiles properly on the Bioconductor servers? > > > > > > Many thanks in advance ! > > > > Best regards, > > Kevin > > > > > > -- > > Kévin RUE-ALBRECHT > > Wellcome Trust Computational Infection Biology PhD Programme > > University College Dublin > > Ireland > > http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > [email protected] mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > [[alternative HTML version deleted]] > > > _______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > [[alternative HTML version deleted]]
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