----- Original Message ----- > From: "Henrik Bengtsson" <henrik.bengts...@ucsf.edu> > To: "Dan Tenenbaum" <dtene...@fredhutch.org> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Thursday, April 16, 2015 6:57:45 PM > Subject: Re: [Bioc-devel] BioC 3.1 branch created > > On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum > <dtene...@fredhutch.org> wrote: > > The BioC 3.1 branch is now ready. > > > > Remember, you always have access to 2 versions of your package: > > the "release" and the "devel" versions. > > > > Right now the "release" version of your package (which is not > > officially released yet but will be tomorrow if > > everything goes well) is in the 3.1 branch and accessible at: > > > > https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/<PKGNAME> > > > > Only bug fixes and documentation improvements should go here. > > > > As always the "devel" version of your package is at: > > > > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/<PKGNAME> > > > > Similarly for experiment packages, where your package is available > > in devel at > > > > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/<PKGNAME> > > > > The release branch of it is in: > > > > https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/<PKGNAME> > > > > > > Normal development of your package can now resume here. > > > > Please let us know if you have any questions. > > Was the wrong version bump done for the GitHub-SVN bridges, because > the 'bioc-sync' commits show release version numbers and not devel > ones?! >
Not the wrong version bump, but it seems like the second one didn't come through. Should be sorted now. Sorry for the inconvenience. Dan > For instance, the aroma.light GitHub repository (master branch), > which > should reflect the Bioc devel version, 'bioc-sync' made a commit > bumping the version from 1.39.5 to 1.40.0. Note that this version is > the version for the Bioc release - not Bioc devel. I would expect it > to be a bump to 1.41.0. Details: > > https://github.com/HenrikBengtsson/affxparser/commit/ef10d93df696d018de3e426bc6c2c1b8256a9b06 > (1.40.0) > https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/affxparser/DESCRIPTION > (1.40.0) > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser/DESCRIPTION > (1.41.0) > > I've verified that the bridge is still to the Bioc devel SVN > (trunk/madman), because when I tweaked the Date in DESCRIPTION (with > the wrong Version field) and pushed to GitHub, that was reflected on > Bioc devel SVN (trunk/madman). > > I see the same for aroma.light as well: > > https://github.com/HenrikBengtsson/aroma.light/commit/64b2bbef5b81baebc5da548110a0bf1c25d208e2 > (2.4.0) > https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/aroma.light/DESCRIPTION > (2.4.0) > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/aroma.light/DESCRIPTION > (2.5.0) > > Holding back with pushes via GitHub until I resolved. Let me know if > this is a FAQ. > > Thanks, > > Henrik > > > > > > > Thanks! > > > > Dan > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel