----- Original Message ----- > From: "Kevin Rue-Albrecht" <kevin....@ucdconnect.ie> > To: "Tiphaine Martin" <tiphaine.mar...@kcl.ac.uk> > Cc: "Dan Tenenbaum" <dtene...@fredhutch.org>, "bioc-devel" > <bioc-devel@r-project.org> > Sent: Friday, April 17, 2015 4:30:24 AM > Subject: Re: [Bioc-devel] BioC 3.1 branch created > > > > > Hi Tiphaine, > > I have followed both of your links,. and they both work for me. > Probably just a glitch in the connection ? > > > Hi Dan, > > > I have a quick question of my own, > I would like to bridge the new release branch to my Github "release" > repository, but: > > * In the dropdown of the bridge creation, release 3.0 is still > listed. I supposed I should wait that 3.1 is listed there, to > create the good bridge?
I will probably remove the 3.0 bridges as we are not building that version anymore and commits to that branch are disabled. > * I had a GitHub repository bridged to the 3.0 release branch. Is > it ok to use the same GitHub repository, and use "SVN wins" > during the bridge creation? That should update GitHub with the > new release code, right? > Yes. Delete your 3.0 bridge first. Dan > > > Many thanks, > Kevin > > > On 17 April 2015 at 11:43, Martin, Tiphaine < > tiphaine.mar...@kcl.ac.uk > wrote: > > > Hi Dan, > > When I try to access on my package, I have ³Internal Server Error². > Maybe > I make a mistake somewhere. > > https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/ > coMET > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/coMET > > Regards, > Tiphaine > > > > On 17/04/2015 05:44, "Dan Tenenbaum" < dtene...@fredhutch.org > > wrote: > > > > > > >----- Original Message ----- > >> From: "Henrik Bengtsson" < henrik.bengts...@ucsf.edu > > >> To: "Dan Tenenbaum" < dtene...@fredhutch.org > > >> Cc: "bioc-devel" < bioc-devel@r-project.org > > >> Sent: Thursday, April 16, 2015 6:57:45 PM > >> Subject: Re: [Bioc-devel] BioC 3.1 branch created > >> > >> On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum > >> < dtene...@fredhutch.org > wrote: > >> > The BioC 3.1 branch is now ready. > >> > > >> > Remember, you always have access to 2 versions of your package: > >> > the "release" and the "devel" versions. > >> > > >> > Right now the "release" version of your package (which is not > >> > officially released yet but will be tomorrow if > >> > everything goes well) is in the 3.1 branch and accessible at: > >> > > >> > > >> https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpack > >>s/<PKGNAME> > >> > > >> > Only bug fixes and documentation improvements should go here. > >> > > >> > As always the "devel" version of your package is at: > >> > > >> > https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ > >> > <PKGNAME> > >> > > >> > Similarly for experiment packages, where your package is > >> > available > >> > in devel at > >> > > >> > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ > >> > <PKGNAME> > >> > > >> > The release branch of it is in: > >> > > >> > > >> https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs > >>/<PKGNAME> > >> > > >> > > >> > Normal development of your package can now resume here. > >> > > >> > Please let us know if you have any questions. > >> > >> Was the wrong version bump done for the GitHub-SVN bridges, > >> because > >> the 'bioc-sync' commits show release version numbers and not devel > >> ones?! > >> > > > >Not the wrong version bump, but it seems like the second one didn't > >come > >through. > > > >Should be sorted now. Sorry for the inconvenience. > > > >Dan > > > > > > > >> For instance, the aroma.light GitHub repository (master branch), > >> which > >> should reflect the Bioc devel version, 'bioc-sync' made a commit > >> bumping the version from 1.39.5 to 1.40.0. Note that this version > >> is > >> the version for the Bioc release - not Bioc devel. I would expect > >> it > >> to be a bump to 1.41.0. Details: > >> > >> > >> https://github.com/HenrikBengtsson/affxparser/commit/ef10d93df696d018de3e > >>426bc6c2c1b8256a9b06 > >> (1.40.0) > >> > >> https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpack > >>s/affxparser/DESCRIPTION > >> (1.40.0) > >> > >> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser/DE > >>SCRIPTION > >> (1.41.0) > >> > >> I've verified that the bridge is still to the Bioc devel SVN > >> (trunk/madman), because when I tweaked the Date in DESCRIPTION > >> (with > >> the wrong Version field) and pushed to GitHub, that was reflected > >> on > >> Bioc devel SVN (trunk/madman). > >> > >> I see the same for aroma.light as well: > >> > >> > >> https://github.com/HenrikBengtsson/aroma.light/commit/64b2bbef5b81baebc5d > >>a548110a0bf1c25d208e2 > >> (2.4.0) > >> > >> https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpack > >>s/aroma.light/DESCRIPTION > >> (2.4.0) > >> > >> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/aroma.light/D > >>ESCRIPTION > >> (2.5.0) > >> > >> Holding back with pushes via GitHub until I resolved. Let me know > >> if > >> this is a FAQ. > >> > >> Thanks, > >> > >> Henrik > >> > >> > > >> > > >> > Thanks! > >> > > >> > Dan > >> > > >> > _______________________________________________ > >> > Bioc-devel@r-project.org mailing list > >> > https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> > > > >_______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > -- > > > Kévin RUE-ALBRECHT > Wellcome Trust Computational Infection Biology PhD Programme > University College Dublin > Ireland > http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel