The URL redirection is something I can try to add. For the other error, you need to get openssl installed and made visible to pkg-config, so that rtracklayer finds it during its build process.
Michael On Thu, May 5, 2016 at 2:01 PM, Leonardo Collado Torres <lcoll...@jhu.edu> wrote: > Hi Michael, > > I have a use case that is similar to > https://support.bioconductor.org/p/81267/#82142 and looks to me like > it might need some changes in rtracklayer to work. That's why I'm > posting it here this time. > > Basically, I'm trying to use rtracklayer to import a bigwig file over > the web which is in a different type of url than before. Using > utils::download.file() with the defaults doesn't work, I have to use > method = 'curl' and extra = '-L'. > > More specifically, the original url > http://duffel.rail.bio/recount/DRP000366/bw/DRR000897.bw has an > effective url > https://content-na.drive.amazonaws.com/cdproxy/templink/i_aQAPZJkJ9d9lN1NO5DJJtlbpvAdgbNuc1SkqSTHFouFiZq5 > > Now, using the second url with utils::download.file() and default > methods also doesn't work. It does on the browser though. > > > As you can see, downloading the file doesn't work out of the box. > Which I guess that it's not surprising that using rtracklayer I get > errors like: > > In seqinfo(ranges) : > No openssl available in netConnectHttps for > content-na.drive.amazonaws.com : 443 > > You can find further details (code and log file) at > https://gist.github.com/lcolladotor/c500dd79d49aed1ef33ade5417111453 > > Thanks, > Leo > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel