hi,
I have noticed that in the recent release of BioC the vignettes produced
as Sweave/PDF documents do not show anymore the metadata written using
%\VignetteIndexEntry{}, while this seems to work fine with the HTML
vignettes.
compare for instance the vignette metadata in the landing pages of the
latest release 3.3 of:
http://bioconductor.org/packages/VariantFiltering
http://bioconductor.org/packages/qpgraph
with the previous release 3.2:
http://bioconductor.org/packages/3.2/bioc/html/VariantFiltering.html
http://bioconductor.org/packages/3.2/bioc/html/qpgraph.html
while HTML vignettes do not seem to have this problem, see for instance:
http://www.bioconductor.org/packages/release/bioc/html/BiocStyle.html
http://www.bioconductor.org/packages/release/bioc/html/AnnotationHub.html
according to the current "Writing R Extentions" manual, this kind of
metadata line is still valid in latex, and the local HTML landing page
of vignettes via browseVignettes() shows that metadata. so i guess this
must be an issue to resolve on the BioC website.
cheers,
robert.
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