Hi, Just to clarify, we do have daily software builds that start at 2:15pm PST. We did not have a devel build report this week on Tuesday, Jan 24 due to a problem with the postrun script. AFAIK that is the only day this week we haven't had a full build report.
Looking at the svn logs for LOBSTAHS in devel, there were quite a few commits on Jan 25. About 1/3 were before the 2:25pm deadline. These were probably the commits that straddled the deadline: ------------------------------------------------------------------------ r126164 | j.collins | 2017-01-25 14:34:52 -0800 (Wed, 25 Jan 2017) | 1 line Merge branch 'master' of https://github.com/Bioconductor-mirror/LOBSTAHS into devel ------------------------------------------------------------------------ r126159 | j.collins | 2017-01-25 13:56:09 -0800 (Wed, 25 Jan 2017) | 1 line Remove .tar files So the package picked up by the builds was r126159. If we check this revision out of svn svn co -r126159 https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LOBSTAHS and look at the DESCRIPTION file the version is 1.1.1. So that version was picked up yesterday for today's builds. The new build report just posted for Jan 26 (which started Jan 25 at 2:25pm PST) and it is again showing version 1.1.1 as we would expect. It looks like you bumped the version in -r126221 but made several changes after that. It's good practice to bump the version as part of your final commit. When you don't, the version doesn't really represent a snapshot of the package - you have drift here over 5 commits, all with the same version. The version bump is the trigger that refreshes / posts to the package landing page so it's important to bump as part of your final commit. ------------------------------------------------------------------------ r126225 | j.collins | 2017-01-25 14:58:22 -0800 (Wed, 25 Jan 2017) | 1 line Changed paths: M /trunk/madman/Rpacks/LOBSTAHS/README.md Reversing the stylistic edit ------------------------------------------------------------------------ r126224 | j.collins | 2017-01-25 14:58:15 -0800 (Wed, 25 Jan 2017) | 1 line Changed paths: M /trunk/madman/Rpacks/LOBSTAHS/README.md Stylistic edit ------------------------------------------------------------------------ r126223 | j.collins | 2017-01-25 14:58:08 -0800 (Wed, 25 Jan 2017) | 1 line Changed paths: M /trunk/madman/Rpacks/LOBSTAHS/README.md M /trunk/madman/Rpacks/LOBSTAHS/man/LOBdbase.Rd M /trunk/madman/Rpacks/LOBSTAHS/man/LOBdefaults.Rd M /trunk/madman/Rpacks/LOBSTAHS/man/doLOBscreen.Rd M /trunk/madman/Rpacks/LOBSTAHS/man/generateLOBdbase.Rd M /trunk/madman/Rpacks/LOBSTAHS/vignettes/LOBSTAHS.Rmd Adding Fulton E. hux. paper to references throughout package ------------------------------------------------------------------------ r126222 | j.collins | 2017-01-25 14:57:56 -0800 (Wed, 25 Jan 2017) | 1 line Changed paths: M /trunk/madman/Rpacks/LOBSTAHS/data/default.LOBdbase.RData Commit updated default database ------------------------------------------------------------------------ r126221 | j.collins | 2017-01-25 14:57:47 -0800 (Wed, 25 Jan 2017) | 1 line Changed paths: M /trunk/madman/Rpacks/LOBSTAHS/DESCRIPTION Bump version, date The builds tomorrow should post results for 1.1.3. Valerie On 01/26/2017 11:05 AM, Kasper Daniel Hansen wrote: > Traditionally we have had daily builds, which then takes more than 12h to > complete. Recently, the daily build schedule has been more intermitten - I > don't know for sure but I thought we were back to daily builds. > > Still, there can be a big delay due to build time and start, like up to > 36h. But it is 1.1.3 in subversion, so I think it is a build delay. > > On Thu, Jan 26, 2017 at 11:04 AM, James Collins < > james.r.coll...@aya.yale.edu> wrote: > >> Thanks, Kasper. On your second point: Yes, several recent updates. The >> bump to v1.1.2 was two days ago, so I figured that would have been >> reflected in a newer build already. I will give it a few more days. >> Jamie >> >> >> On Jan 26, 2017, at 11:57 AM, Kasper Daniel Hansen < >> kasperdanielhan...@gmail.com> wrote: >> >> It happens in devel that your dependencies fail and then your package >> fails. Right now XCMS fails in devel because mzR fails. That will >> presumably be sorted out. >> >> The latest build report >> http://bioconductor.org/checkResults/3.5/bioc-LATEST/LOBSTAHS/ >> is 1.1.1. Did you do a couple of updates very recently - remember the >> build system gets run (at most) daily. >> >> Best, >> Kasper >> >> On Thu, Jan 26, 2017 at 9:53 AM, James Collins <james.r.collins@aya. >> yale.edu> wrote: >> >>> Hi all: >>> >>> Two questions regarding the LOBSTAHS package: >>> >>> 1. Dev build seems to be failing (“error”) on toluca2 after I pushed some >>> updates from our git repository to Bioc svn. Error is: >>> * installing to library ‘/Library/Frameworks/R.framewo >>> rk/Versions/3.4/Resources/library’ >>> ERROR: dependencies ‘xcms’, ‘CAMERA’ are not available for package >>> ‘LOBSTAHS’ >>> * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/ >>> library/LOBSTAHS’ >>> However, seems to build fine on oaxaca. Any ideas why this is happening? >>> xcms and CAMERA should be available for the package, correct? >>> >>> 2. After bumping the version number (from 1.1.1 to 1.1.2 and then 1.1.3) >>> with the updates, the latest version (1.1.3) does not appear to be showing >>> on the dev page, which leads me to believe it is not the version being >>> disseminated with biocLite() >>> >>> http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html < >>> http://bioconductor.org/packages/3.5/bioc/html/LOBSTAHS.html> >>> >>> Perhaps this is because I cherry-pick all my commits when committing from >>> git to the Bioc svn? Or because of the error message? >>> >>> Thanks in advance! >>> >>> Jamie Collins >>> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. 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