Hi Hai,
Looks you added CRAN ggforce recently (in February) to the Suggests
field of Pi. ggforce depends on CRAN package udunits2, which itself
requires system library libudunits2 in order to compile on Linux,
which itself can be installed with
sudo apt-get install libudunits2-dev
on Debian/Ubuntu.
We didn't have libudunits2-dev on malbec2 yet so I just installed it.
The fact that we didn't have it indicates that Pi is the first
Bioconductor package to (indirectly) require it.
If everything goes as expected, Pi should turn all green on Friday.
Cheers,
H.
On 03/29/2017 09:08 PM, hfang.shanghai wrote:
Thanks for the clarification. Now everything is ok except the check in Linux
(https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_Pi_malbec2-2Dchecksrc.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=0Y-86XDQL67bMUlLmRJOg3cEWekH9GHDJNrc5ZEStPg&e=
). The package 'ggforce' is not preinstalled in Linux (others seem fine).
Best, Hai
Sent from my iPhone
On 29 Mar 2017, at 17:17, Michael Lawrence <lawrence.mich...@gene.com> wrote:
It's actually an error in rtracklayer.
On Wed, Mar 29, 2017 at 8:28 AM, Shepherd, Lori
<lori.sheph...@roswellpark.org> wrote:
That is correct. When the Biostrings package is corrected this ERROR in your
package should resolve automatically.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Hai Fang
<hf...@well.ox.ac.uk>
Sent: Wednesday, March 29, 2017 10:28:39 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Problem for Biostrings?
Hi,
I got the error ��object ��inverted�� is not exported by 'namespace:Biostrings�� at
https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_Pi_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=2bhT9aV6mJhSUF8Iq3BZHB_Y2EVt0wNFx6ZcylnnUaE&e=
. It seems due to the package ��Biostrings�� which failed to pass the check
(https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_Biostrings_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=COIN8OGj-Nd6NzWJEoBq6sXBbJLSqHoZpwPKuGe8DH8&e=
). Is it right or something else?
Thanks,
Hai
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