Thanks Herve for resolving it. Best, Hai Sent from my iPhone
> On 30 Mar 2017, at 06:42, Hervé Pagès <hpa...@fredhutch.org> wrote: > > Hi Hai, > > Looks you added CRAN ggforce recently (in February) to the Suggests > field of Pi. ggforce depends on CRAN package udunits2, which itself > requires system library libudunits2 in order to compile on Linux, > which itself can be installed with > > sudo apt-get install libudunits2-dev > > on Debian/Ubuntu. > > We didn't have libudunits2-dev on malbec2 yet so I just installed it. > The fact that we didn't have it indicates that Pi is the first > Bioconductor package to (indirectly) require it. > > If everything goes as expected, Pi should turn all green on Friday. > > Cheers, > H. > > >> On 03/29/2017 09:08 PM, hfang.shanghai wrote: >> Thanks for the clarification. Now everything is ok except the check in Linux >> (https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_Pi_malbec2-2Dchecksrc.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=0Y-86XDQL67bMUlLmRJOg3cEWekH9GHDJNrc5ZEStPg&e= >> ). The package 'ggforce' is not preinstalled in Linux (others seem fine). >> >> Best, Hai >> >> Sent from my iPhone >> >>> On 29 Mar 2017, at 17:17, Michael Lawrence <lawrence.mich...@gene.com> >>> wrote: >>> >>> It's actually an error in rtracklayer. >>> >>> On Wed, Mar 29, 2017 at 8:28 AM, Shepherd, Lori >>> <lori.sheph...@roswellpark.org> wrote: >>>> That is correct. When the Biostrings package is corrected this ERROR in >>>> your package should resolve automatically. >>>> >>>> >>>> Lori Shepherd >>>> >>>> Bioconductor Core Team >>>> >>>> Roswell Park Cancer Institute >>>> >>>> Department of Biostatistics & Bioinformatics >>>> >>>> Elm & Carlton Streets >>>> >>>> Buffalo, New York 14263 >>>> >>>> ________________________________ >>>> From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Hai Fang >>>> <hf...@well.ox.ac.uk> >>>> Sent: Wednesday, March 29, 2017 10:28:39 AM >>>> To: bioc-devel@r-project.org >>>> Subject: [Bioc-devel] Problem for Biostrings? >>>> >>>> Hi, >>>> >>>> I got the error ��object ��inverted�� is not exported by >>>> 'namespace:Biostrings�� at >>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_Pi_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=2bhT9aV6mJhSUF8Iq3BZHB_Y2EVt0wNFx6ZcylnnUaE&e= >>>> . It seems due to the package ��Biostrings�� which failed to pass the >>>> check >>>> (https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_Biostrings_&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=COIN8OGj-Nd6NzWJEoBq6sXBbJLSqHoZpwPKuGe8DH8&e= >>>> ). Is it right or something else? >>>> >>>> Thanks, >>>> >>>> Hai >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=mA0gVnx-5AftDivwP-G_hbeYRiXwDTZj1PW75JbUyeA&e= >>>> >>>> >>>> This email message may contain legally privileged and/or confidential >>>> information. If you are not the intended recipient(s), or the employee or >>>> agent responsible for the delivery of this message to the intended >>>> recipient(s), you are hereby notified that any disclosure, copying, >>>> distribution, or use of this email message is prohibited. If you have >>>> received this message in error, please notify the sender immediately by >>>> e-mail and delete this email message from your computer. Thank you. >>>> [[alternative HTML version deleted]] >>>> >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=mA0gVnx-5AftDivwP-G_hbeYRiXwDTZj1PW75JbUyeA&e= >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=mA0gVnx-5AftDivwP-G_hbeYRiXwDTZj1PW75JbUyeA&e= >> >> [[alternative HTML version deleted]] >> >> >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=q6QK4JMsHgaqD9x6avyUhERn3LtF6NIbMxmXc_omuXE&s=mA0gVnx-5AftDivwP-G_hbeYRiXwDTZj1PW75JbUyeA&e= >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
