Looking here: https://github.com/Bioconductor-mirror/anamiR/commits/master
While I see some commits related to table_pre, none of them appear to change anything in the "data" directory. On Thu, Apr 20, 2017 at 2:57 PM, 王棣台 <r04945...@ntu.edu.tw> wrote: > No, > I definitely have committed it since version 1.1.8 > and I can see it right now in my anamiR/data files. > > Ti-Tai > ________________________________________ > 從: Hervé Pagès [hpa...@fredhutch.org] > 寄件日期: 2017年4月21日 上午 05:53 > 至: 王棣台; bioc-devel@r-project.org > 主旨: Re: [Bioc-devel] Object not found in vignette > > On 04/20/2017 02:50 PM, 王棣台 wrote: >> I put in the anamiR/data/ >> Just like other data I used in the vignette. > > As I said, I don't see it there. According to data(package="anamiR"), the > data sets available in your package are: > > Data sets in package ‘anamiR’: > > egSymb A table with information of gene symbol and > gene ID > kegg.gs KEGG pathways with gene set information > mirna miRNA expression data about breast cancer > mrna mRNA expression data about breast cancer > pheno.mirna phenotype data of 'mirna' about breast cancer > pheno.mrna phenotype data of 'mrna' about breast cancer > > So again, did you forget to commit it to svn, or did you add it to the > wrong place? > > H. > >> >> Ti-Tai >> ________________________________________ >> 從: Hervé Pagès [hpa...@fredhutch.org] >> 寄件日期: 2017年4月21日 上午 05:45 >> 至: 王棣台; bioc-devel@r-project.org >> 主旨: Re: [Bioc-devel] Object not found in vignette >> >> On 04/20/2017 02:36 PM, 王棣台 wrote: >>> That missing object is a list format data generated by myself, >>> so I don't think it would be about Depends, Imports, or Suggests. >>> Except this one, other generated data can be found. >> >> And where did you put this data set so that data(table_pre) can >> find it? >> >> H. >> >>> >>> Ti-Tai >>> >>> ________________________________________ >>> 從: Hervé Pagès [hpa...@fredhutch.org] >>> 寄件日期: 2017年4月21日 上午 05:16 >>> 至: 王棣台; bioc-devel@r-project.org >>> 主旨: Re: [Bioc-devel] Object not found in vignette >>> >>> Why don't you give us the name of your package so we can look >>> at it? I suspect something is missing in your Depends, Imports, >>> or Suggests field. Works for you because you have the missing >>> package installed on your machine but not on the build machine >>> because the package is missing there. The build system (and your >>> users) doesn't have this package so the vignette fails there. >>> By adding the package to Depends, Imports, or Suggests, you let >>> the build system know that this package needs to be installed >>> before it tries to build the vignette. >>> >>> H. >>> >>> On 04/20/2017 01:51 PM, 王棣台 wrote: >>>> Hi all, >>>> >>>> I kept getting the same Error from BUILD REPORT: >>>> >>>> >>>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with >>>> diagnostics: >>>> object 'table_pre' not found >>>> >>>> However, I did confirm my package with R CMD BUILD and CHECK before >>>> committing, and there was no errors and warnings. >>>> >>>> I really don't know what is the problem. >>>> >>>> Does anyone have the same error before? >>>> >>>> Many Thanks, >>>> >>>> Ti-Tai Wang >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=TK-8woT9u1jslARFhHX9Y_pg-0Cg9S5vwIyvMX86pHU&s=3gO7lG40pXAtK-3RkKJ-yhJdwqUw-NZwBORf4PaN7xg&e= >>>> >>> >>> -- >>> Hervé Pagès >>> >>> Program in Computational Biology >>> Division of Public Health Sciences >>> Fred Hutchinson Cancer Research Center >>> 1100 Fairview Ave. N, M1-B514 >>> P.O. Box 19024 >>> Seattle, WA 98109-1024 >>> >>> E-mail: hpa...@fredhutch.org >>> Phone: (206) 667-5791 >>> Fax: (206) 667-1319 >>> >> >> -- >> Hervé Pagès >> >> Program in Computational Biology >> Division of Public Health Sciences >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Ave. N, M1-B514 >> P.O. Box 19024 >> Seattle, WA 98109-1024 >> >> E-mail: hpa...@fredhutch.org >> Phone: (206) 667-5791 >> Fax: (206) 667-1319 >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel