Did you "svn add" the file? On Thu, Apr 20, 2017 at 3:10 PM, 王棣台 <r04945...@ntu.edu.tw> wrote: > I find that my data file will not change after I did any commit. > That might be the problem. > Is there anything I forget to do? > > Ti-Tai > ________________________________________ > 從: Hervé Pagès [hpa...@fredhutch.org] > 寄件日期: 2017年4月21日 上午 06:00 > 至: 王棣台; bioc-devel@r-project.org > 主旨: Re: [Bioc-devel] Object not found in vignette > > Also recently you bumped the version from 1.1.* to 1.2.* > then went back to 1.1.* again. As a result the version that > is available via biocLite() is 1.2.2, as reflected on the package > landing page: > > https://bioconductor.org/packages/3.5/bioc/html/anamiR.html > > Any change you do to your package now won't propagate unless > you bump the version to > 1.2.2. > > H. > > On 04/20/2017 02:52 PM, 王棣台 wrote: >> it should be in my package since anamiR version 1.1.8 >> That is weird. >> >> Ti-Tai >> ________________________________________ >> 從: Hervé Pagès [hpa...@fredhutch.org] >> 寄件日期: 2017年4月21日 上午 05:49 >> 至: 王棣台; bioc-devel@r-project.org >> 主旨: Re: [Bioc-devel] Object not found in vignette >> >> On 04/20/2017 02:45 PM, Hervé Pagès wrote: >>> On 04/20/2017 02:36 PM, 王棣台 wrote: >>>> That missing object is a list format data generated by myself, >>>> so I don't think it would be about Depends, Imports, or Suggests. >>>> Except this one, other generated data can be found. >>> >>> And where did you put this data set so that data(table_pre) can >>> find it? >> >> I mean the other generated data sets can be found because they are >> in your package but I don't see the table_pre data set there. Did you forget >> to commit it? >> >> H. >> >>> >>> H. >>> >>>> >>>> Ti-Tai >>>> >>>> ________________________________________ >>>> 從: Hervé Pagès [hpa...@fredhutch.org] >>>> 寄件日期: 2017年4月21日 上午 05:16 >>>> 至: 王棣台; bioc-devel@r-project.org >>>> 主旨: Re: [Bioc-devel] Object not found in vignette >>>> >>>> Why don't you give us the name of your package so we can look >>>> at it? I suspect something is missing in your Depends, Imports, >>>> or Suggests field. Works for you because you have the missing >>>> package installed on your machine but not on the build machine >>>> because the package is missing there. The build system (and your >>>> users) doesn't have this package so the vignette fails there. >>>> By adding the package to Depends, Imports, or Suggests, you let >>>> the build system know that this package needs to be installed >>>> before it tries to build the vignette. >>>> >>>> H. >>>> >>>> On 04/20/2017 01:51 PM, 王棣台 wrote: >>>>> Hi all, >>>>> >>>>> I kept getting the same Error from BUILD REPORT: >>>>> >>>>> >>>>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with >>>>> diagnostics: >>>>> object 'table_pre' not found >>>>> >>>>> However, I did confirm my package with R CMD BUILD and CHECK before >>>>> committing, and there was no errors and warnings. >>>>> >>>>> I really don't know what is the problem. >>>>> >>>>> Does anyone have the same error before? >>>>> >>>>> Many Thanks, >>>>> >>>>> Ti-Tai Wang >>>>> >>>>> [[alternative HTML version deleted]] >>>>> >>>>> _______________________________________________ >>>>> Bioc-devel@r-project.org mailing list >>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=TK-8woT9u1jslARFhHX9Y_pg-0Cg9S5vwIyvMX86pHU&s=3gO7lG40pXAtK-3RkKJ-yhJdwqUw-NZwBORf4PaN7xg&e= >>>>> >>>>> >>>> >>>> -- >>>> Hervé Pagès >>>> >>>> Program in Computational Biology >>>> Division of Public Health Sciences >>>> Fred Hutchinson Cancer Research Center >>>> 1100 Fairview Ave. N, M1-B514 >>>> P.O. Box 19024 >>>> Seattle, WA 98109-1024 >>>> >>>> E-mail: hpa...@fredhutch.org >>>> Phone: (206) 667-5791 >>>> Fax: (206) 667-1319 >>>> >>> >> >> -- >> Hervé Pagès >> >> Program in Computational Biology >> Division of Public Health Sciences >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Ave. N, M1-B514 >> P.O. Box 19024 >> Seattle, WA 98109-1024 >> >> E-mail: hpa...@fredhutch.org >> Phone: (206) 667-5791 >> Fax: (206) 667-1319 >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel
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