On 19 May 2017 15:39, Stephanie M. Gogarten wrote: > Dear Core Team, > > What do you think about adding the following generics to BiocGenerics? > > colData > rowRanges > ref > alt > qual
Currently exists in MSnbase with signature setGeneric("qual", function(object) standardGeneric("qual")) As far as I know, only used in that packages. I'm more than happy to use BiocGenerics::qual when/if it becomes available. > filt > header Currently exists in mzR with signature setGeneric("header", function(object, scans, ...) standardGeneric("header")) and is used at least in mzR and MSnbase. I guess that signature, as it is, wouldn't be a good for BiocGenerics. Best wishes, Laurent > fixed > info > geno > > They are currently defined by both > VariantAnnotation/SummarizedExperiment and SeqArray. Given the > increasingly widespread use of VCF files, it seems likely that other > packages may want to use them in future also. > > Stephanie > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Laurent Gatto | @lgatt0 http://cpu.sysbiol.cam.ac.uk/ http://lgatto.github.io/ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel