Hi Nitesh,
I think I solved it: another  “--allow-unrelated-histories” for the merge from 
the additional branch did the trick.

Best,
Fabian

> On 1. Sep 2017, at 20:57, Turaga, Nitesh <nitesh.tur...@roswellpark.org> 
> wrote:
> 
> Hi Fabian,
> 
> Could you please try the merge for the other branch? Or please give me the 
> url of the GitHub package, and tell me which branch and I’ll see what the 
> problem is.
> 
> Or try it and copy the commands in the email along with the output.
> 
> I need more information to help you resolve this.
> 
> Best,
> 
> Nitesh
> 
> 
>> On Sep 1, 2017, at 4:38 AM, Fabian Müller <fmuel...@mpi-inf.mpg.de 
>> <mailto:fmuel...@mpi-inf.mpg.de>> wrote:
>> 
>> Hi,
>> I am trying to make the git transition from our RnBeads package. 
>> Unfortunately I am not able to merge from our current github’s master branch 
>> (which had been existing since SVN times) to the BioC master branch due to 
>> unrelated history:
>> “refusing to merge unrelated histories”
>> I would like to keep syncing both to our github and to BioC. I tried the 
>> “--allow-unrelated-histories” option, but it did not really work: after 
>> resolving a bunch of merge conflicts, pulling again from the BioC git and 
>> resolving merge conflicts again, I am able to push to BioC. However, if I 
>> then want to merge from another branch of our github, I get unrelated 
>> histories again.
>> Has anyone else had this issue and knows how to resolve this best?
>> 
>> Best regards,
>> Fabian
>> 
>> PS: Here is the link to our github:
>> https://github.com/epigen/RnBeads.git 
>> <https://github.com/epigen/RnBeads.git> 
>> <https://github.com/epigen/RnBeads.git 
>> <https://github.com/epigen/RnBeads.git>>
>> __________________________________________________
>>   Fabian Müller                     
>>    Max Planck Institute for Informatics
>>    Computational Biology and Applied Algorithmics Department
>> 
>>    Saarland Informatics Campus
>>    Building E 1.4
>>    Room 509
>>    66123 Saarbrücken
>>    Germany
>> 
>>    Phone: +49 (681) 9325 3009
>>    Email:  fmuel...@mpi-inf.mpg.de
>>    http://www.mpi-inf.mpg.de/~fmueller/
>> 
>> 
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>> 
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> 
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