The Bioconductor 3.11 builds transitioned in the last week to using the new
tool chain, following CRAN's lead.
As a sanity check (ours!) what makes you say
> It appears that the Bioconductor developmental repository is using
> rtools35
?
Martin Morgan
On 4/19/20, 10:41 PM, "Bioc-devel on behalf of Gordon K Smyth"
<bioc-devel-boun...@r-project.org on behalf of sm...@wehi.edu.au> wrote:
Dear Biocore team,
How is Bioconductor handling the transition to the new R for Windows
toolchain?
The R-Devel build for Windows currently available from CRAN uses Jerome
Oom's new gcc 8.3.0 toolchain from rtools40, whereas R-Devel builds for Windows
downloaded from CRAN a couple of months ago used the older rtool35 toolchain.
It appears that the Bioconductor developmental repository is using
rtools35, which means that BiocManager::install is incompatible with the
R-Devel build for Windows now on CRAN but works with R-Devel from a month or
two ago.
When Bioconductor 3.11 is released, will it be the rtools40 toolchain or
rtools35?
Thanks
Gordon
------------------------------------------
Professor Gordon K Smyth
Joint Head, Bioinformatics Division
Walter and Eliza Hall Institute of Medical Research
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