Thanks Lori, I had not seen this page before. Best, Ted
On Thu, Dec 10, 2020 at 1:19 PM Kern, Lori <lori.sheph...@roswellpark.org> wrote: > There is information on this page: > http://bioconductor.org/developers/how-to/troubleshoot-build-report/ > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ted > Natoli <ted.e.nat...@gmail.com> > *Sent:* Thursday, December 10, 2020 1:17 PM > *To:* jmac...@u.washington.edu <jmac...@u.washington.edu> > *Cc:* Bioc-devel <bioc-devel@r-project.org> > *Subject:* Re: [Bioc-devel] updating released version of package > > Ah, I see. Ok thanks for that clarification. Do you know roughly how long > it might take to build? > > On Thu, Dec 10, 2020 at 11:15 AM James W. MacDonald <jmac...@uw.edu> > wrote: > > > You also have a commit from yesterday in master that isn't yet reflected > > on the build machine, again because it takes time for the build machine > to > > build stuff. IIRC we are over 24 hours per build, but that may be old > news > > (FAKE NEWS!). > > > > On Thu, Dec 10, 2020 at 11:09 AM James W. MacDonald <jmac...@uw.edu> > > wrote: > > > >> It looks like you bumped it just yesterday: > >> > >> commit 5a9929aed33e40c11609f3d064b114d95d95e6cb > >> Author: Ted Natoli <ted.e.nat...@gmail.com> > >> Date: Wed Dec 9 16:42:16 2020 -0500 > >> > >> fixing version bump > >> > >> commit accd8a5871fe38a8a1f63b32b4e79d2640e86792 > >> Author: Ted Natoli <ted.e.nat...@gmail.com> > >> Date: Wed Dec 9 16:32:47 2020 -0500 > >> > >> update RELEASE version number > >> > >> And it takes a while to propagate, so you are probably being too > >> impatient. > >> > >> Jim > >> > >> On Thu, Dec 10, 2020 at 10:59 AM Ted Natoli <ted.e.nat...@gmail.com> > >> wrote: > >> > >>> Hi James, > >>> > >>> Thanks for the response. The corresponding changes were committed to > the > >>> master branch on November 23. The development build report seems to be > >>> using the correct code, or at least close to it, as the most recent > commit > >>> it shows there is from December 8. I did push to both github and > >>> bioconductor repos and I did bump the version number too, which is > >>> reflected in the development build report but not release. > >>> > >>> Here are links to the build reports if it's helpful. > >>> > >>> devel: > https://secure-web.cisco.com/1-1x1XOPmgvcYx-uk9wqvKLIcUzB7NcY56Pl8ujqdH2sTHkZOp4H9RJF5e6K5nU6Sqj3nEwtgA6xpUpSLSL7jiqF3JVwEJgmM4q79UaY1iBvLOfA9kU-gTk9_iwmL00kzN2yMCcY9orTK4fcvihoDj-ldKOYZFzQBRkqDdPzRAs4rQn-ZPfmEUkO3OAB8zDf-aVja6j87lZ86Jrrb9fzEWxB0K9jeD3DVLXoIyBIYgx_yjwAVl15_o9dwI2X1KOuHTS0sVqytOnv0RfJ8czSExzqpXpl82czloCYNOaCM9zkZpOoAmdKDcwLSutSxheHL/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.13%2Fbioc-LATEST%2FcmapR%2F > >>> release: > https://secure-web.cisco.com/12_5xQ-XfxLpJNnk5VC8wKtBoVDDTo0Z8wxemZfI-18YLzB0Noy8MuPwvTY72U3wVYWjsKLzIN9A3mqVArwHY_ESztUpa3THjf9rZELyOTFXSuFOf4om6nypiil9jQPWQSIGiruvqNIwG1gL2xjyO7nRWSCTGVaULgKR1Ns64Y8JTvdlsSzH6ZZ24tAPmKNDEKx9l29inU1vq0_aQKKGX7F8C9RK8DCt4J44ZefPNPZLpHvaCA-_Ndt0wuoIgoLEIA2336TC85zU4sZRuV6PJeFTdnRg6R2Jdk8KOSJjVqKg9GN9xKqx9sOwCwx5-SzBo/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.12%2Fbioc-LATEST%2FcmapR%2F > >>> > >>> Thanks again, > >>> Ted > >>> > >>> On Thu, Dec 10, 2020 at 10:41 AM James W. MacDonald <jmac...@uw.edu> > >>> wrote: > >>> > >>>> Did you bump your version number? How long has it been since you > >>>> committed the changes? If you have a github repo, you remembered to > push to > >>>> both the Bioconductor and GitHub repos? > >>>> > >>>> On Thu, Dec 10, 2020 at 10:19 AM Ted Natoli <ted.e.nat...@gmail.com> > >>>> wrote: > >>>> > >>>>> Hello all, > >>>>> > >>>>> I'm trying to update the released version of my package, cmapR, > >>>>> because one > >>>>> of the packages it depends on has been deprecated and hence install > of > >>>>> cmapR now fails. > >>>>> > >>>>> I've followed the instructions here in order to get those changes > over > >>>>> to > >>>>> the released version of the package: > >>>>> > >>>>> > https://secure-web.cisco.com/1D5P1egX7dz5hm7CM0oANiK3VX-_MXhLCtIy8BsnJvMcVmQAonSNdwUsMDCsFqAhODKVOxwjOJErSovxX-JBMdBt1duxe5jNPQyGakv2UzVkZSysCvZVW9eDE3Ki7G8CaatM1godiuNSYPgglczPbeiooK1bQHITsl_9EpRiABQM5mLKJ3aAoiGsNpFlj4csvQ5_TlbGHH75lA87kcNZ89PdeJaSlRSGVsIjtmthogIWhYDRBXQkD3jpzUU1c2t3_aXkhpm6x6tA7M7BOJxOlBFy1nATTUw__TbC2tYXgKHdiT58URhaHLgZvn-o4K0iH/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fbug-fix-in-release-and-devel%2F > >>>>> > >>>>> However, I don't see that the released version has been updated. > >>>>> Looking at > >>>>> the build reports, the latest commit reflected there is from before I > >>>>> made > >>>>> the code changes. How do I get these changes to propagate to the > >>>>> release > >>>>> branch? > >>>>> > >>>>> I'm sure I must be missing something very basic, but any help would > be > >>>>> appreciated. > >>>>> > >>>>> Thanks in advance, > >>>>> Ted > >>>>> > >>>>> [[alternative HTML version deleted]] > >>>>> > >>>>> _______________________________________________ > >>>>> Bioc-devel@r-project.org mailing list > >>>>> > https://secure-web.cisco.com/1Bbk5zhzZQCGLOzdeyngfDDg5gS-0079cppW1TDP0iqcVR8yfBvWE60I0sVi7khG_Gig4WNu5rFQ9XFyI_Gi7b93ZUuDH4BOzuIhtCtvuCsjbATYFikwJ_5Y0RGNlfomkBngiZyqfghdilLcPYXFDG79SGhl8OG-o_R_-PN0F5gAi_EGRSk3PXeF_TzeW-CHS8Bl-vjU0i89IoYpETBSiFcB8eVwfTpArlkaRW7KqNAQZKeMnRyd7UBJiX07FerFDyoqzEJ4DUEiBi-0h9ahH5SMqVmloom1fWj221XRQDw4VydJ_g7W30sk9Mj0TRINl/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > >>>>> > >>>> > >>>> > >>>> -- > >>>> James W. MacDonald, M.S. > >>>> Biostatistician > >>>> University of Washington > >>>> Environmental and Occupational Health Sciences > >>>> 4225 Roosevelt Way NE, # 100 > >>>> Seattle WA 98105-6099 > >>>> > >>> > >> > >> -- > >> James W. MacDonald, M.S. > >> Biostatistician > >> University of Washington > >> Environmental and Occupational Health Sciences > >> 4225 Roosevelt Way NE, # 100 > >> Seattle WA 98105-6099 > >> > > > > > > -- > > James W. MacDonald, M.S. > > Biostatistician > > University of Washington > > Environmental and Occupational Health Sciences > > 4225 Roosevelt Way NE, # 100 > > Seattle WA 98105-6099 > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1Bbk5zhzZQCGLOzdeyngfDDg5gS-0079cppW1TDP0iqcVR8yfBvWE60I0sVi7khG_Gig4WNu5rFQ9XFyI_Gi7b93ZUuDH4BOzuIhtCtvuCsjbATYFikwJ_5Y0RGNlfomkBngiZyqfghdilLcPYXFDG79SGhl8OG-o_R_-PN0F5gAi_EGRSk3PXeF_TzeW-CHS8Bl-vjU0i89IoYpETBSiFcB8eVwfTpArlkaRW7KqNAQZKeMnRyd7UBJiX07FerFDyoqzEJ4DUEiBi-0h9ahH5SMqVmloom1fWj221XRQDw4VydJ_g7W30sk9Mj0TRINl/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. 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