Did you remember to do a version bump when submitting the changes? It does not appear so. The build machines will not recognize code changes without a valid version bump. You should increase from 1.13.0 to 1.13.1 for the new changes to propagate and be available through BiocManager::install
Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Adrian Pasculescu <a.pascule...@gmail.com> Sent: Wednesday, March 3, 2021 3:05 PM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] ClusterJudge problems reported in the build/check Hi all, It seems that Bioconductor multi build/check does NOT use the updated git of ClusterJudge package. Here is the error reported: https://secure-web.cisco.com/1FX8bgt-e3UVIXqqb7o-7tSGAl8so3G6pjPwwojk2QQzE8FVPxXkMmYTi6Ve9UfBEwCb6W1vcnFTrU3_U86EucqP5i09RQ4vU3GaCLUekFnbGRRxqJbcaqpQ1cdXybl9HpAEk1Hu9MFESy88sKvNmMt2G9OSMvSbFJW6hlMLn9ICPbS9jRGxDR59mw1KbT6YWS6-PvuVz2fpWO-oZg45QfvUmQzJzhV2BnnOH6TxPgIIAyKfnMA2UGy3xV9ZaXQzVINGxnD-F8sBJOwQtwIV7Fo72RopfChJ5iqb1L5rIsAld8NbXixe8lUphBCBuz9fz/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.12%2Fbioc-LATEST%2FClusterJudge%2Fmalbec1-checksrc.html However I fixed the error about a month ago and pushed the changes. The small changes are in R/download_Yeast_GO_mapping.R and simply truncates the number of columns in a delimited file that is downloaded: I tested and it works fine after a fresh clone from bioconductor: $git clone g...@git.bioconductor.org:packages/ClusterJudge.git git remote -v origin g...@git.bioconductor.org:packages/ClusterJudge.git (fetch) origin g...@git.bioconductor.org:packages/ClusterJudge.git (push) upstream g...@git.bioconductor.org:packages/ClusterJudge (fetch) upstream g...@git.bioconductor.org:packages/ClusterJudge (push) The changes are also present in https://secure-web.cisco.com/1TyyaIunplwTvVhF-NHdSpEr78V5DPcEtWabrCkboVWX-mjqLDDnYIl6W2J2QWTAmQfWz65ITnFC-759X4c6wgW46xPwZsP4GRzvKzvGevlMufwsA1Fac_UwA-1-AHit3w5hUG6RyN1ldHodxAGsfJZjEhPk3NvyyFbT0PQh6fN45WWA2jSW1EtgZX3nU2pZHkhmiqVKZwIY7HJhcMJ-kBpzRhMSyuAwPQJV0zrvP0Ml8nVNTYfLj4uDBBSi4cay6UlgPkdaEpF9xwmKVOr7nC0DEzeDS5eNN3ffCQv2jNehRutitNJ62UsFqkQdQ5aq5/https%3A%2F%2Fgithub.com%2Fapasculescu%2FClusterJudge however they don't seem to be pulled by BioConductor when it runs the multi build/check. Where is Bioconductor pulling the ClusterJudge code from? Many thanks, Adrian Pasculescu [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1hHmBlTrSqKNfSYMh5K6rsNzxzPbnPmvi4vPhz2qKpBMjH1tsrbaGBHEjxBzsU6ZtRSsb7gSqqU3N5iNknfJ95KiU4VDf8-mMLgAcWyBsneHWtumAXTMbhAiFWicXsGYd5JQPFJvMheUXlJRl6hw0fZjGswQcUZ3wVtl7PVdLzXTlNkbr4OnKKe_jLfJQQ34EGKTb4ZuDiadzHAFgeGI2QIdPUkvad_rikhZiC7TYAZ0wqFshi_uB0vD6cA9utc_I3E6rSmcNrzi2ovvIr38LbIa19tUkmlq0L-q0vapVSdzCPHcHHHb8NFV8ZWPktOFs/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
