Dear all, I would like to reproduce a build error (on Bioc devel) using docker. The issue is that the docker image fails to build. I use the following Dockerfile:
> FROM bioconductor/bioconductor_docker:devel > RUN install2.r --error broom.mixed\ > BiocManager \ > devtools \ > dirmult\ > fitdistrplus\ > lme4\ > MASS\ > mice\ > multcomp\ > survival\ > knitr\ > rmarkdown\ > testthat > RUN R -e ' BiocManager::install(version = '3.13',ask=FALSE) ; > BiocManager::install(c("BiocParallel","BiocStyle","diffcyt","S4Vectors","SummarizedExperiment"),version="3.13",ask=FALSE)' And then build with: > docker build --pull . Which gives the following error: > 1: In install.packages(...) : > installation of package ‘flowWorkspace’ had non-zero exit status > 2: In install.packages(...) : > installation of package ‘ggcyto’ had non-zero exit status > 3: In install.packages(...) : > installation of package ‘flowStats’ had non-zero exit status > 4: In install.packages(...) : > installation of package ‘openCyto’ had non-zero exit status > 5: In install.packages(...) : > installation of package ‘CytoML’ had non-zero exit status > 6: In install.packages(...) : > installation of package ‘FlowSOM’ had non-zero exit status > 7: In install.packages(...) : > installation of package ‘diffcyt’ had non-zero exit status What am I doing wrong? (according to the build report on malbec2 this should work) Thanks for the help! (I try to reproduce the error for the package censcyt http://bioconductor.org/checkResults/devel/bioc-LATEST/censcyt/ ) Best, Reto [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel