note that diffcyt does not currently build at https://bioconductor.org/checkResults/3.13/bioc-LATEST/ -- its errors need to be repaired for your build to succeed
On Tue, Mar 9, 2021 at 11:07 AM Reto Gerber via Bioc-devel < bioc-devel@r-project.org> wrote: > Dear all, > > I would like to reproduce a build error (on Bioc devel) using docker. The > issue is that the docker image fails to build. I use the following > Dockerfile: > > > FROM bioconductor/bioconductor_docker:devel > > RUN install2.r --error broom.mixed\ > > BiocManager \ > > devtools \ > > dirmult\ > > fitdistrplus\ > > lme4\ > > MASS\ > > mice\ > > multcomp\ > > survival\ > > knitr\ > > rmarkdown\ > > testthat > > RUN R -e ' BiocManager::install(version = '3.13',ask=FALSE) ; > BiocManager::install(c("BiocParallel","BiocStyle","diffcyt","S4Vectors","SummarizedExperiment"),version="3.13",ask=FALSE)' > > And then build with: > > > docker build --pull . > > Which gives the following error: > > > 1: In install.packages(...) : > > installation of package ‘flowWorkspace’ had non-zero exit status > > 2: In install.packages(...) : > > installation of package ‘ggcyto’ had non-zero exit status > > 3: In install.packages(...) : > > installation of package ‘flowStats’ had non-zero exit status > > 4: In install.packages(...) : > > installation of package ‘openCyto’ had non-zero exit status > > 5: In install.packages(...) : > > installation of package ‘CytoML’ had non-zero exit status > > 6: In install.packages(...) : > > installation of package ‘FlowSOM’ had non-zero exit status > > 7: In install.packages(...) : > > installation of package ‘diffcyt’ had non-zero exit status > > What am I doing wrong? (according to the build report on malbec2 this > should work) > Thanks for the help! > > (I try to reproduce the error for the package censcyt > http://bioconductor.org/checkResults/devel/bioc-LATEST/censcyt/ ) > > Best, > Reto > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel