Thank you Tim. That makes sense. It seems only occurring in Windows. Is there a known lower memory limit or stack usage in Windows?
Windows Server 2012 R2 Standard / x64 http://bioconductor.org/checkResults/release/bioc-LATEST/sesame/tokay2-checksrc.html Error: cannot allocate vector of size 6.6 Mb Execution halted Error: 'Calloc' could not allocate memory (27514181 of 1 bytes) Fatal error: error during cleanup Thanks again, Wanding On Nov 27, 2021, at 4:15 PM, Tim Triche, Jr. <tim.tri...@gmail.com<mailto:tim.tri...@gmail.com>> wrote: Recursion issue. Make sure some constructor isn’t constructing itself into oblivion. This is a nasty one --t On Nov 27, 2021, at 5:48 AM, Zhou, Wanding <wanding.z...@pennmedicine.upenn.edu<mailto:wanding.z...@pennmedicine.upenn.edu>> wrote: Hi, Recently we are experience some memory issue on both development and release (mostly Windows) that causes the sesame package build to fail. We are trying to address it but it seems to run fine locally on our side. This is the error on the development branch Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) Error: processing vignette 'sesame.Rmd' failed with diagnostics: C stack usage 7977908 is too close to the limit And this is the error on the release branch data = data.frame(estimate=c(runif(10, 0, 10))) plotLollipop(data) Error in grid.newpage() : 'Calloc' could not allocate memory (27541715 of 1 bytes) Calls: <Anonymous> -> print.ggplot -> grid.newpage Let me know if you are aware of something or have a clue. Any insight will be super helpful! Thanks! Zoom link: https://us02web.zoom.us/j/4248839577 ---- Wanding Zhou, Ph.D. Assistant Professor Office: CTRB 9050 3501 Civic Center Blvd Philadelphia, PA 19104 Lab: https://zhou-lab.github.io/ Phone (o): (215) 590-0473 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel