Thanks for the input Herve. I saw your post but can you help me confirm that mine is on the 32-bit windows since it says mingw32 (64-bit)?
Windows Server 2012 R2 Standard / x64 * using platform: x86_64-w64-mingw32 (64-bit) http://bioconductor.org/checkResults/release/bioc-LATEST/sesame/tokay2-checksrc.html Does that mean all the examples added together cannot use over 3G memory? I still don't think I am using that much but I will remove some examples and see that solves the problem Very best, Wanding On Nov 29, 2021, at 12:15 PM, Hervé Pagès <hpages.on.git...@gmail.com<mailto:hpages.on.git...@gmail.com>> wrote: Hi Wanding, A process cannot allocate more than 3Gb of memory on 32-bit Windows. See my other post on this list for more information about this: https://stat.ethz.ch/pipermail/bioc-devel/2021-November/018663.html Cheers, H. On 22/11/2021 05:17, Zhou, Wanding wrote: Hi, Recently we are experience some memory issue on both development and release (mostly Windows) that causes the sesame package build to fail. We are trying to address it but it seems to run fine locally on our side. This is the error on the development branch Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) Error: processing vignette 'sesame.Rmd' failed with diagnostics: C stack usage 7977908 is too close to the limit And this is the error on the release branch data = data.frame(estimate=c(runif(10, 0, 10))) plotLollipop(data) Error in grid.newpage() : 'Calloc' could not allocate memory (27541715 of 1 bytes) Calls: <Anonymous> -> print.ggplot -> grid.newpage Let me know if you are aware of something or have a clue. Any insight will be super helpful! Thanks! Zoom link: https://us02web.zoom.us/j/4248839577 ---- Wanding Zhou, Ph.D. Assistant Professor Office: CTRB 9050 3501 Civic Center Blvd Philadelphia, PA 19104 Lab: https://zhou-lab.github.io/ Phone (o): (215) 590-0473 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com<mailto:hpages.on.git...@gmail.com> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
