I redownloaded the resource that was causing the error
ah_resources[["AH50453"]]
It should resolve on the next build.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Julien
Wollbrett <julien.wollbr...@unil.ch>
Sent: Monday, August 5, 2024 7:45 AM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] Build error in nebbiolo1 for package BgeeCall
Hello,
I am the maintainer of the BgeeCall package. There is an issue in the build of
the package on nebbiolo1 since at least the last Bioconductor release.
The error comes from the vignette when I try to load data from the
AnnotationHub package. I am not able to reproduce the error locally. Do you
have any idea what the problem could be?
block of code that produce the error:
library(AnnotationHub)
library(rtracklayer)
ah <- AnnotationHub()
ah_resources <- query(ah, c("Ensembl", "Caenorhabditis elegans", "84"))
annotation_object <- ah_resources[["AH50789"]]
# remove MtDNA not tag as C. elegans genome
annotation_object <- dropSeqlevels(annotation_object, "MtDNA", "coarse")
transcriptome_object <- import.2bit(ah_resources[["AH50453"]])
The error message is :
Quitting from lines 94-102 [unnamed-chunk-4] (bgeecall-manual.Rmd)
Error: processing vignette 'bgeecall-manual.Rmd' failed with diagnostics:
UCSC library operation failed
Best Regards,
Julien Wollbrett
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