There seems to be a dependency error that comes up when running an analysis with affy. It only takes three commands.
################################################################### library(affy) Data <- ReadAffy(file="/home/johndoe/GSM492799.CEL.gz") eset <- rma(Data) Warning in install.packages(cdfname, lib = lib, repos = Biobase:::biocReposList(), : 'lib = "/usr/local/lib64/R/library"' is not writable Would you like to create a personal library ~/R/x86_64-unknown-linux-gnu-library/2.14 to install packages into? (y/n) ################################################################### Is this error reproducible by others? Thank you Ivan sessionInfo() R version 2.14.0 Under development (unstable) (2011-04-14 r55450) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] affy_1.31.1 Biobase_2.13.1 loaded via a namespace (and not attached): [1] affyio_1.21.0 preprocessCore_1.15.0 tools_2.14.0 Ivan Gregoretti, PhD National Institute of Diabetes and Digestive and Kidney Diseases National Institutes of Health 5 Memorial Dr, Building 5, Room 205. Bethesda, MD 20892. USA. Phone: 1-301-496-1016 and 1-301-496-1592 Fax: 1-301-496-9878 _______________________________________________ Bioc-sig-sequencing mailing list Bioc-sig-sequencing@r-project.org https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
