Hello, I am experiencing a problem regarding the load in memory of bed files of 30 GB. my function read.table unleash the error : Error in unique(x) : length xxxxxx is too large for hashing.
this is generated by the function MKsetup of the unique.c file. Even by increasing by 10 000x the value, the error persists. I believe the function pushes more data in ram, but I am not sure this is the good way to focus on. Ultimately, I would like to produce a GenomeData object from either a BAM file or a bed file. has someone ever worked with very very big BAM files (about 30 GB) thanks Rene paradis _______________________________________________ Bioc-sig-sequencing mailing list Bioc-sig-sequencing@r-project.org https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
