NB! CC to the biohaskell list. Nicholas Ingolia <[email protected]> writes:
> I'd been thinking more about Strand & Offset than the sequence types, > actually--for those types I feel like the default Show instance meets > your criteria. > I'm agnostic about sequence types Applying Ockham, I'll just go with the derived instances, then. Available now as version 0.2 from http://malde.org/~ketil/biohaskell/biocore -- if everything looks good, I'll push to hackage later. Btw, would it be possible to make samtools not depend on seqloc? The latter pulls in a load of dependencies, it's no big deal, but it seems that samtools could be useful on its own? (Read: I'm using it without using seqloc :-) Also, I have a small samtools-unsafe library, it just lets you extract all alignments from the whole file or from a region as a lazy list of Bam1s. This isn't very fashionable (*cough* iteratees *cough*), but I find it rather convenient. Would you be interested in merging this into samtools, or should I just keep it separate? -k -- If I haven't seen further, it is by standing in the footprints of giants _______________________________________________ Biohaskell mailing list [email protected] http://malde.org/cgi-bin/mailman/listinfo/biohaskell
