The Bioconductor project now maintains a docker base image that includes: - R - RStudio - Basic bioconductor packages - All required system software for installing 98% of Bioconductor packages
https://www.bioconductor.org/help/docker/ *Quick Start*: 1. Install docker 2. run docker run \ -e PASSWORD=bioc \ -p 8787:8787 \ bioconductor/bioconductor_docker:devel This command will run the docker container bioconductor/bioconductor_docker:devel on your local machine. RStudio will be available on your web browser at https://localhost:8787. The USER is fixed to always being rstudio. The password in the above command is given as bioc but it can be set to anything. 8787 is the port being mapped between the docker container and your host machine. NOTE: password cannot be rstudio. The user is logged into the rstudio user by default. Sean -- Sean Davis, MD, PhD Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda, MD 20892 https://seandavi.github.io/ https://twitter.com/seandavis12
