A few folks have asked about singularity versions of these containers. Singularity can (often) run docker images directly:
https://hpc.nih.gov/apps/singularity.html#docker Sean On Thu, Mar 12, 2020 at 11:34 AM Sean Davis <[email protected]> wrote: > The Bioconductor project now maintains a docker base image that includes: > > - R > - RStudio > - Basic bioconductor packages > - All required system software for installing 98% of Bioconductor packages > > https://www.bioconductor.org/help/docker/ > > *Quick Start*: > > 1. Install docker > 2. run > > docker run \ > -e PASSWORD=bioc \ > -p 8787:8787 \ > bioconductor/bioconductor_docker:devel > > This command will run the docker container > bioconductor/bioconductor_docker:devel on your local machine. > > RStudio will be available on your web browser at https://localhost:8787. > The USER is fixed to always being rstudio. The password in the above > command is given as bioc but it can be set to anything. 8787 is the port > being mapped between the docker container and your host machine. NOTE: > password cannot be rstudio. > > The user is logged into the rstudio user by default. > > Sean > >
