I was wondering if there were any methods for generating a consensus sequence for alignments? Or any suggestions for calculating the frequency of symbols at each position in an alignment. I had a look at the DistributionTools after seeing a past e-mail to the list but couldnt figure if this would do the job as Im new to Java. Thanks Nath ---------------------------------------------------------------------------- ------ Dr. Nathan S. Haigh Bioinformatics PostDoctoral Research Associate Room B2 211 Tel: +44 (0)114 22 20112 Department of Animal and Plant Sciences Mob: +44 (0)7742 533 569 University of Sheffield Fax: +44 (0)114 22 20002 Western Bank Web: www.bioinf.shef.ac.uk Sheffield www.petraea.shef.ac.uk S10 2TN ---------------------------------------------------------------------------- ------
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