I've just tried to reproduce this and haven't been able to. Could you supply the full code, including the bit where you set startCoord and endCoord, and also the full file that you're working on it with?
(You'll have to send them direct to me if you're using attachments as the mailing list won't accept them). cheers, Richard 2008/11/6 Ella Veitch <[EMAIL PROTECTED]>: > Hi guys- new here hope this is the right medium for getting questions > answered. > > I hope someone can shed some light as to what i am doing wrong here > I am trying to extract subsequence data from a RichSequence as follows: > > RichSequenceIterator seqs=RichSequence.IOTools.readFastaDNA(input, > ns); > RichSequence rs=seqs.nextRichSequence(); > > return RichSequence.Tools.subSequence(rs, startCoord, > endCoord,rs.getNamespace(),seqName, > rs.getAccession(), rs.getIdentifier(), > rs.getVersion(),rs.getSeqVersion()); > > When I check my result againt the expected i find that for example 5001-5175 > yeilds a sequence located at 10001 and 10175 > > Any insights as to why? > > I hope so > > Thanks for your help > > Ella > > _______________________________________________ > Biojava-l mailing list - Biojava-l@lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: [EMAIL PROTECTED] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - Biojava-l@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l